Gene loci information

Transcript annotation

  • This transcript has been annotated as Cytochrome P450 9e2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g644 g644.t3 TTS g644.t3 4932821 4932821
chr_3 g644 g644.t3 isoform g644.t3 4932876 4936140
chr_3 g644 g644.t3 exon g644.t3.exon1 4932876 4933061
chr_3 g644 g644.t3 cds g644.t3.CDS1 4932876 4933061
chr_3 g644 g644.t3 exon g644.t3.exon2 4933113 4933541
chr_3 g644 g644.t3 cds g644.t3.CDS2 4933113 4933541
chr_3 g644 g644.t3 exon g644.t3.exon3 4933665 4934442
chr_3 g644 g644.t3 cds g644.t3.CDS3 4933665 4934442
chr_3 g644 g644.t3 exon g644.t3.exon4 4934498 4934751
chr_3 g644 g644.t3 cds g644.t3.CDS4 4934498 4934709
chr_3 g644 g644.t3 exon g644.t3.exon5 4936125 4936140
chr_3 g644 g644.t3 TSS g644.t3 NA NA

Sequences

>g644.t3 Gene=g644 Length=1663
TTCACATTTCAATCATTCAACTGTGTGTTTATAAGTGAAAAAAATATAGCATTGTGAAAT
GGATATTTATTTAATAATAATTTGGGTTGTCATTTTTCTAGGATATTTCATTTACAAAAA
AGCAACTAAAAATGCAAAATTCTTTGAAAAACAAGGAGTTCCATTTAAAAAACCACTGCC
GTTTGTCGGTAATTCATTACGACTTTTAATGAAGAAGGAAAATATGATAGAATCTTTAAT
GGATTATTATGAAAAATTTAAACATAGTTCTGTTTATGGAGTGTTCAGTATGAACGTACC
TTTTTTTGTTATCACTGATCCAGAATTGATAAAACAAATTACAATTAAAGATTTTGATAG
CTTTGTCAATCATGATAAGAGCTTTAATGAAGATGTCGATAAGTTTTCAAGCAAAATGTT
ATTTACATTGATAGATGAAAAGTGGAAACATATGAGATCAGTTCTTAGTCCCATTTTCAC
AAGTTCTAAAATGAAAATGATGTTTGGAATTTTATCAGAATGTGCAAATGAATTTGTTGA
ACATCATGAAGAAAAAGCAAAGCATGGAAAAGTCATTGTTAATTGTGTTGAAACTTATCC
ACGTTATACTGTTGATGGTATTTCTACTGCTGTTCTTGGGTTCAAGGGAGACTGTATTAA
GAATGAAGATAGCAAGCTCTATAAATTAGCAATGCGTATGAGAAAACCAACATTTTTGAC
AAATCTGAAACTTATGCTTTTCATCGTCTTTCGTTGGCTTTACATTAAACTTGGCTTACA
ATTGACACTCAAAGAAGTTTATGATTTCTTTTATAATGCAATCATTAAAGTAATGAATGA
ACGTGAAGAAAAAGGAATTTTCCGGCCTGATGTCGTGCAATTGCTACTTCAAGCTCGTAA
AGGACAATTGCAAAAGGAAAGTGATGTCAATGAAAAAGAATTATCAAACTTTTCTGCCAA
TATTGAATATGATACTGGAGCTCAAAATAGGAAAATAACTAATTGGACTGATGAGCATTT
TATGGCTCAAGGATTCCTGTTCTTTGCGGCTGGCTTTGACACCACTAACATTCTACTTCA
AATTACCAGTTATTGTTTAGCAAAAAATAAGGAAGTTCAAGAAGAATTAATCAGAGAAAT
TGATGATGTTTTTGAAGAACTCGATGGAAAACCAATCACATATGAAGCATTGCATAAAAT
GAAATATTTGGATATGGTTATTTCTGAAGCATTAAGATTTTGGCCTCCAGCATTTGCAAC
AACACGTCAATGTAATAAAGATTATGATATGAAATTGAAAGATGGAAAAGTTATCAAAAT
TAAAGATGGTGATCTTATTCTTCTACCAATCTATGCAATTCATCATGATGAAAGATTTTT
CCCAAATCCAGAGAAATTCGATCCACTTCGATTTAGTGATGAAAATAAAGAATCAATTGC
ATTAGGATCTTACATTCCATTCGGCAGTGGACCAAGAGTTTGCATTGGAAGTCGTTTTGC
ATTAATGGAAGCTAAATTGCTCATATTTAATGTTTTGAGTAAATTCACAATGGAAGTTTG
TGATCAGACACCAGAAAAACTTGAATTGATTCCATCAATGACAGAAATTACTTTCAAAAA
GGCAATTTGTGTTGAATATCGTCCACGAAAGAAGAACAATTGA

>g644.t3 Gene=g644 Length=534
MDIYLIIIWVVIFLGYFIYKKATKNAKFFEKQGVPFKKPLPFVGNSLRLLMKKENMIESL
MDYYEKFKHSSVYGVFSMNVPFFVITDPELIKQITIKDFDSFVNHDKSFNEDVDKFSSKM
LFTLIDEKWKHMRSVLSPIFTSSKMKMMFGILSECANEFVEHHEEKAKHGKVIVNCVETY
PRYTVDGISTAVLGFKGDCIKNEDSKLYKLAMRMRKPTFLTNLKLMLFIVFRWLYIKLGL
QLTLKEVYDFFYNAIIKVMNEREEKGIFRPDVVQLLLQARKGQLQKESDVNEKELSNFSA
NIEYDTGAQNRKITNWTDEHFMAQGFLFFAAGFDTTNILLQITSYCLAKNKEVQEELIRE
IDDVFEELDGKPITYEALHKMKYLDMVISEALRFWPPAFATTRQCNKDYDMKLKDGKVIK
IKDGDLILLPIYAIHHDERFFPNPEKFDPLRFSDENKESIALGSYIPFGSGPRVCIGSRF
ALMEAKLLIFNVLSKFTMEVCDQTPEKLELIPSMTEITFKKAICVEYRPRKKNN

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g644.t3 Gene3D G3DSA:1.10.630.10 Cytochrome p450 17 534 2.4E-123
2 g644.t3 PANTHER PTHR24292 CYTOCHROME P450 7 523 8.5E-150
7 g644.t3 PRINTS PR00463 E-class P450 group I signature 320 337 3.3E-17
9 g644.t3 PRINTS PR00385 P450 superfamily signature 331 348 3.6E-10
4 g644.t3 PRINTS PR00463 E-class P450 group I signature 340 366 3.3E-17
11 g644.t3 PRINTS PR00385 P450 superfamily signature 386 397 3.6E-10
6 g644.t3 PRINTS PR00463 E-class P450 group I signature 430 454 3.3E-17
5 g644.t3 PRINTS PR00463 E-class P450 group I signature 465 475 3.3E-17
8 g644.t3 PRINTS PR00385 P450 superfamily signature 466 475 3.6E-10
3 g644.t3 PRINTS PR00463 E-class P450 group I signature 475 498 3.3E-17
10 g644.t3 PRINTS PR00385 P450 superfamily signature 475 486 3.6E-10
1 g644.t3 Pfam PF00067 Cytochrome P450 35 512 5.1E-82
16 g644.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 5 -
18 g644.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 6 22 -
14 g644.t3 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 23 218 -
17 g644.t3 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 219 236 -
15 g644.t3 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 237 534 -
21 g644.t3 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 468 477 -
12 g644.t3 SUPERFAMILY SSF48264 Cytochrome P450 35 530 1.83E-105
20 g644.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 5 19 -
19 g644.t3 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 219 236 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

Pathway

This gene does not belong to any pathways.

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed