Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Cytochrome P450 9c1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g644 g644.t4 TTS g644.t4 4932821 4932821
chr_3 g644 g644.t4 isoform g644.t4 4933527 4934709
chr_3 g644 g644.t4 exon g644.t4.exon1 4933527 4933541
chr_3 g644 g644.t4 cds g644.t4.CDS1 4933527 4933541
chr_3 g644 g644.t4 exon g644.t4.exon2 4933665 4934424
chr_3 g644 g644.t4 cds g644.t4.CDS2 4933665 4934423
chr_3 g644 g644.t4 exon g644.t4.exon3 4934494 4934709
chr_3 g644 g644.t4 TSS g644.t4 4934775 4934775

Sequences

>g644.t4 Gene=g644 Length=991
ATGGATATTTATTTAATAATAATTTGGGTTGTCATTTTTCTAGGATATTTCATTTACAAA
AAAGCAACTAAAAATGCAAAATTCTTTGAAAAACAAGGAGTTCCATTTAAAAAACCACTG
CCGTTTGTCGGTAATTCATTACGACTTTTAATGAAGAAGGAAAATATGATAGAATCTTTA
ATGGATTATTATGAAAAATTTAAACATAGTTCGTAATATGAACGTACCTTTTTTTGTTAT
CACTGATCCAGAATTGATAAAACAAATTACAATTAAAGATTTTGATAGCTTTGTCAATCA
TGATAAGAGCTTTAATGAAGATGTCGATAAGTTTTCAAGCAAAATGTTATTTACATTGAT
AGATGAAAAGTGGAAACATATGAGATCAGTTCTTAGTCCCATTTTCACAAGTTCTAAAAT
GAAAATGATGTTTGGAATTTTATCAGAATGTGCAAATGAATTTGTTGAACATCATGAAGA
AAAAGCAAAGCATGGAAAAGTCATTGTTAATTGTGTTGAAACTTATCCACGTTATACTGT
TGATGGTATTTCTACTGCTGTTCTTGGGTTCAAGGGAGACTGTATTAAGAATGAAGATAG
CAAGCTCTATAAATTAGCAATGCGTATGAGAAAACCAACATTTTTGACAAATCTGAAACT
TATGCTTTTCATCGTCTTTCGTTGGCTTTACATTAAACTTGGCTTACAATTGACACTCAA
AGAAGTTTATGATTTCTTTTATAATGCAATCATTAAAGTAATGAATGAACGTGAAGAAAA
AGGAATTTTCCGGCCTGATGTCGTGCAATTGCTACTTCAAGCTCGTAAAGGACAATTGCA
AAAGGAAAGTGATGTCAATGAAAAAGAATTATCAAACTTTTCTGCCAATATTGAATATGA
TACTGGAGCTCAAAATAGGAAAATAACTAATTGGACTGATGAGCATTTTATGGCTCAAGG
ATTCCTGTTCTTTGCGGCTGGCTTTGACACC

>g644.t4 Gene=g644 Length=258
MNVPFFVITDPELIKQITIKDFDSFVNHDKSFNEDVDKFSSKMLFTLIDEKWKHMRSVLS
PIFTSSKMKMMFGILSECANEFVEHHEEKAKHGKVIVNCVETYPRYTVDGISTAVLGFKG
DCIKNEDSKLYKLAMRMRKPTFLTNLKLMLFIVFRWLYIKLGLQLTLKEVYDFFYNAIIK
VMNEREEKGIFRPDVVQLLLQARKGQLQKESDVNEKELSNFSANIEYDTGAQNRKITNWT
DEHFMAQGFLFFAAGFDT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g644.t4 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 258 2.8E-41
2 g644.t4 PANTHER PTHR24292 CYTOCHROME P450 3 258 2.5E-59
3 g644.t4 PANTHER PTHR24292:SF90 CYTOCHROME P450 317A1-RELATED 3 258 2.5E-59
4 g644.t4 PRINTS PR00464 Group II E-class P450 signature 49 69 1.0E-5
5 g644.t4 PRINTS PR00464 Group II E-class P450 signature 105 123 1.0E-5
1 g644.t4 Pfam PF00067 Cytochrome P450 3 258 2.3E-16
9 g644.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 141 -
11 g644.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 142 159 -
10 g644.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 160 258 -
7 g644.t4 SUPERFAMILY SSF48264 Cytochrome P450 2 258 9.82E-34
6 g644.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 142 159 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed