General information for g6460.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6460 is located on chr_2: 17149523..17150206 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6460 | g6460.t2 | isoform | g6460.t2 | 17145468 | 17146748 |
| chr_2 | g6460 | g6460.t2 | exon | g6460.t2.exon1 | 17145468 | 17146748 |
| chr_2 | g6460 | g6460.t2 | cds | g6460.t2.CDS1 | 17146407 | 17146619 |
| chr_2 | g6460 | g6460.t2 | TSS | g6460.t2 | NA | NA |
| chr_2 | g6460 | g6460.t2 | TTS | g6460.t2 | NA | NA |
Sequences
>g6460.t2 Gene=g6460 Length=1281
GTTCGACAGCCCACCCAAGTGCCTGTTACACTAGTTAGAAATGATGGAATTATCTATGCA
ACAGGCCTCACATTCACATACACACCCGAACCTGGACCACGACAGCATTATGGTCAAGCA
GATGAAGTCATGAGAGCATCACAAAATCGTACGCGAACAGAAAATTCCGCAAATAATAAC
AATAATAGTCCAAGTAATACTGCAAATCATAATCCAAGTAGTAATAGTAGTAGCACACCA
TCAACAGCTACAATGTCACCAGTAAGTCTCAATCAAAGCTACTCATCACTACCATCAATC
TCAGAAATGTCATCATGGAATATGCATAGTGGACTTCAATAGTGAATTATTTGAGTTGTT
TTCATTAAATACATACGTAAAGTGCAATGCTCTCAAATATAATATAGTGATCAATCTTTA
AAATATGAAATGAAACAAAAAATGATCAAATTAGAACAAAAAATAAGATAGAGAGAGAGA
GAAAAAGATGATATAGTTATATTTTATGTTCAGGGAAAGTTTTCCAATGAAAATGCTTAA
ACATCGAATAGAAATATTAAATTTTCTATTGAACCAAAGAACACAATCAAATCAAATCAA
ATTTTTAATAAGAGAAGGAACATTGTCTGATAAAAAGAAATTTTGATAATTTTCCTTAAA
CTTAATCCTTGTTTGCTTATCGAGCACATATATACATAGGCAAATGCCTAATTGAAAAAA
AAAGACATGAGAGAAAAAGCATAAAAGACAGTCATTAATTAAGTTCTTTTACTCTATGCT
ACTTTGTGTATAATTGTTGGAAATTATTTTGCCAATTTTATTTATTTTAATTTTTTTTGT
CAATCTTACTGTATGCTTGTGAGATATTCATTTTCCAAACATATTATTTGTAATCTCTTA
AATATCCCTACCTAATTGTTTCTCTCACTTTGACTTTTTTCTTTTATTTTTGAAAGATAC
CAAATTGTAATAATTACTTTATGTTATTGAATAATGTGAATGAATCATGAAAGTGAAAGA
AAGATAAAAAAGAAATAGGTATGTAACTAGATGGTGAACTATATATTTTCAAAAAAAAGA
GAAATGACAGATTTGAGAAAAAATCTTAAGAGATATTTTTGTACATAAAAACCGACAGAT
AGTATTTCATAAAAATGAAGAGAGACCCTTTAGTTTATGATACTTAAGGACTTTTTTTGG
ACGATTAATGTAATTTATATTGTAGATCATGAAATAAATGATGAAAAAATGAAGGAAAAA
TTTAAAAAATTATAAAATTGT
>g6460.t2 Gene=g6460 Length=70
MRASQNRTRTENSANNNNNSPSNTANHNPSSNSSSTPSTATMSPVSLNQSYSSLPSISEM
SSWNMHSGLQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g6460.t2 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 47 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
