General information for g6462.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6462 is located on chr_2: 17159791..17161893 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6462 | g6462.t3 | TTS | g6462.t3 | 17158503 | 17158503 |
| chr_2 | g6462 | g6462.t3 | isoform | g6462.t3 | 17159362 | 17160880 |
| chr_2 | g6462 | g6462.t3 | exon | g6462.t3.exon1 | 17159362 | 17160880 |
| chr_2 | g6462 | g6462.t3 | cds | g6462.t3.CDS1 | 17159364 | 17160809 |
| chr_2 | g6462 | g6462.t3 | TSS | g6462.t3 | NA | NA |
Sequences
>g6462.t3 Gene=g6462 Length=1519
TTCGTGATATTGCAAAAGTCATAAGTGAAGCTAAAAAAGAAGAAGAAAATCGACCATCGA
CATCAAAACAAATGGAAATAAAGAAAGAAGAACTTCTTGATGAAGATTATGATTTAGAAT
TACAAAAAGCAATACAAATGTCGTTAGGACATGATGTCGATGATGAGCAAGCTGATGAAG
AAGAGCCTAAAAAATGTGACGAACCTATTAAATTGAATACACAACAACGTAAAAAGTTTG
GTAATACAGTTCAAACACATGGACTAGTTCGAGGTTTTATGATGGAATATGCGGAAATGA
ATGATGATGATATTCATGATATGATAAATGAAACACAGCAAGAACCAAATGAAGATGATT
TAAATGATTCATGGAGTGAGAAATTTCCAAATACTGATCGTTATGTACTCTATGGAACAC
AAAAAGAAAATCAAACTCAAAGCAAAGAAGAAAGTCAAGAAAACTCAAAAGAACTCGTCA
TTTTAGTTGATTCAAAAATATCGAAGTTTGAAGAGAACGAAGACTTATTTGCAGATGTGT
TTAATACAGAAGAACAAGTTGATTTATCACATGACAAAAAAGAAGACATTCCAGATGTAG
AAGTAGCTTCGATAGCTTCATCTGATGATGACACTATTGAATATGAAGTTCCTGAAGAGA
TAACACAAAATGAAACAGAAAAACGTAGTGAAACTGAATTCGACTCAGGTTTTGTATCTG
AAGAGAGCAACAAAAAATTATCTACTATCAATGAAAAAACAAATTTAAATCAACTTTCTG
AAAACGATAAATTCTGGGATATTTTGAATGATGATGAAGATAAATCGAAGCCAGTTCTCG
AAAAACAATCGCAACATAAGTTACCTGATATAGTTATGTCTACACACAAAGAGTTACATG
AAACAAAGGAAATAGATGCACAAACTGAAAAAGAAATTTCTGTTATAATTGAAAATGCAG
CAGACAAATCTGATAAAGAAACAAATATGAATCAAGTTTCCGAAAATGATAAATTTTGGA
ATCTTTTGAATGATGATGATGAAAAATCTTTGCCAATATTTAAAAAAGATGTCGATAAAA
ATTCACAAAAAGAAGAAGAAGAACTAAAGATAGCACAATTTCATGAGGATGAAAATATGC
CCCAAAATATTGAAGAATCGGAAAAAATTGAAGACAAAATATCAATTGATATTCAAGAAA
CGATTACAGTTGAGAAAAAAATTGAAATTTCACAAGATGAAGTTGTTTCCTCACAAAAAG
AAGTATCAATTTCACATGATATAAAAGAACCTCAGGAAAAAAGTACACAAGATGAACACA
AGTTGTCATTAGAAGACCAAAAAGATATGGAAAATGCTCTAAAAGCATTAGAACAAGATT
ATACGAAAGAAGAGCTTGAACAATTGCAAACTGATGTAAAGAAACAAACGAAAGATTTTG
AACATGAACGAAACAAATTAAATCGAATGGGAATGTCAATCACACAATCAATGACACGAG
ATTGCAAAGAATTGCTAAA
>g6462.t3 Gene=g6462 Length=482
MEIKKEELLDEDYDLELQKAIQMSLGHDVDDEQADEEEPKKCDEPIKLNTQQRKKFGNTV
QTHGLVRGFMMEYAEMNDDDIHDMINETQQEPNEDDLNDSWSEKFPNTDRYVLYGTQKEN
QTQSKEESQENSKELVILVDSKISKFEENEDLFADVFNTEEQVDLSHDKKEDIPDVEVAS
IASSDDDTIEYEVPEEITQNETEKRSETEFDSGFVSEESNKKLSTINEKTNLNQLSENDK
FWDILNDDEDKSKPVLEKQSQHKLPDIVMSTHKELHETKEIDAQTEKEISVIIENAADKS
DKETNMNQVSENDKFWNLLNDDDEKSLPIFKKDVDKNSQKEEEELKIAQFHEDENMPQNI
EESEKIEDKISIDIQETITVEKKIEISQDEVVSSQKEVSISHDIKEPQEKSTQDEHKLSL
EDQKDMENALKALEQDYTKEELEQLQTDVKKQTKDFEHERNKLNRMGMSITQSMTRDCKE
LL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g6462.t3 | Coils | Coil | Coil | 423 | 462 | - |
| 3 | g6462.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 24 | 50 | - |
| 4 | g6462.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 221 | - |
| 5 | g6462.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 216 | - |
| 8 | g6462.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 367 | - |
| 1 | g6462.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 417 | - |
| 6 | g6462.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 399 | 417 | - |
| 2 | g6462.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 464 | - |
| 7 | g6462.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 482 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed