General information for g6485.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6485 is located on chr_2: 17232147..17233013 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6485 | g6485.t1 | TSS | g6485.t1 | 17232012 | 17232012 |
| chr_2 | g6485 | g6485.t1 | isoform | g6485.t1 | 17232147 | 17233013 |
| chr_2 | g6485 | g6485.t1 | exon | g6485.t1.exon1 | 17232147 | 17232249 |
| chr_2 | g6485 | g6485.t1 | cds | g6485.t1.CDS1 | 17232147 | 17232249 |
| chr_2 | g6485 | g6485.t1 | exon | g6485.t1.exon2 | 17232709 | 17233013 |
| chr_2 | g6485 | g6485.t1 | cds | g6485.t1.CDS2 | 17232709 | 17233013 |
| chr_2 | g6485 | g6485.t1 | TTS | g6485.t1 | 17233330 | 17233330 |
Sequences
>g6485.t1 Gene=g6485 Length=408
ATGGAGACAACAATTTGGAAAAGATTAATTCAATTAAATCCATCTGATGTGCTAAATACA
TTATCTGAAAACTTTTTACCAATGGAAGTTCGTTATTATCTTTCTGAGAAATTCTTTGGT
CATCGTGTACCTTTCCCTATGCCTGAAAATGAATATTTTGTAAATTGGACAACATTCTGT
AAACAACCACTCGAACCACGTGAGTTTATATTTTGGGAGTGGATTTATGCAGCATTGAAA
GTTACAAGAGAACATTTTAAAAACTCTTTTTATGAAGGAAGAATAATAGGTTTCATTGAT
AAGAAAAAGGTTGAACAAAAGTTGGAAGGTACGAAACATAGAACATTCATTCTACGCTTT
TTTGACAGTGAAATTGGAGCAAATACATCTTCATATACAACCAATTAA
>g6485.t1 Gene=g6485 Length=135
METTIWKRLIQLNPSDVLNTLSENFLPMEVRYYLSEKFFGHRVPFPMPENEYFVNWTTFC
KQPLEPREFIFWEWIYAALKVTREHFKNSFYEGRIIGFIDKKKVEQKLEGTKHRTFILRF
FDSEIGANTSSYTTN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6485.t1 | Gene3D | G3DSA:1.10.238.10 | - | 1 | 96 | 0.0e+00 |
| 6 | g6485.t1 | Gene3D | G3DSA:3.30.505.10 | SHC Adaptor Protein | 97 | 135 | 1.5e-06 |
| 1 | g6485.t1 | PANTHER | PTHR11801 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION | 44 | 133 | 0.0e+00 |
| 2 | g6485.t1 | PANTHER | PTHR11801:SF66 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION | 44 | 133 | 0.0e+00 |
| 4 | g6485.t1 | SUPERFAMILY | SSF49417 | p53-like transcription factors | 19 | 85 | 0.0e+00 |
| 3 | g6485.t1 | SUPERFAMILY | SSF55550 | SH2 domain | 89 | 134 | 1.1e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042025 | host cell nucleus | CC |
| GO:0007165 | signal transduction | BP |
| GO:0006355 | regulation of transcription, DNA-templated | BP |
| GO:0003700 | DNA-binding transcription factor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed