Gene loci information

Transcript annotation

  • This transcript has been annotated as Peroxidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6489 g6489.t2 TSS g6489.t2 17239431 17239431
chr_2 g6489 g6489.t2 isoform g6489.t2 17239481 17240556
chr_2 g6489 g6489.t2 exon g6489.t2.exon1 17239481 17240556
chr_2 g6489 g6489.t2 cds g6489.t2.CDS1 17239481 17240554
chr_2 g6489 g6489.t2 TTS g6489.t2 17241574 17241574

Sequences

>g6489.t2 Gene=g6489 Length=1076
ATGAAAATTTTAATTCTTATCGCGGCGGCAGTAATAACTGCAAGTGTGGATGCAGATGAT
TGTGTTAGTCACACTTATCGAACATTAGATGGTTCATGCAACAATTTAAAACATCCTAAT
TGGGGTAAAGCTGGAACTCCATATGCTCGACTTTTGCCAGCACGTTATGGTGATGGAATT
TTCAGTCCACCAAAGTCAAAAACGGGTGCTGATTTGCCAAGCTCAAGACTTGTATCGACT
ACGATTTTTGATACTATTGATTCACCTGATCCCAATCATACAATTGTCACTATGCAATTT
GGTCAATTTGTTGCACATGATATGAGTTTTGGTGGGGCACCTATTCATCCATCATGCTGC
CAAGATGGAAAAATTGTCTCTCATGATCCATTATGTTATCCAATTATTGTTCCAAATGAC
GACCCAGTTCGCTCAGCCGATGGCATCGAATGTATGAATTTTCAACGCACATTAACCGAC
AGAGATAACGAACTTGATGAAAACCGAGCAAATCAACCTGCACAGCAGATAACAGTTGTG
ACAGGCTTTCTTGACCTTTCTCTCGTGTATGGAAACTCCGAGAAAGAATTAGCGCCCGTA
AGAGAATTTAATGCAGGACGTTTAAAGATGGATATCCGTAATGGAAAAGAATGGCCACCA
CATAACCCTGATGGTGATAAAATTTGTTTTGTTGAGACATCTGGAGAGACTTGCTACTTC
GGAGGCGACCCACGTCTAAATCAAAGTCCTGATTTATCAATTCTTCATATTTATTATATT
CGTGAGCATAATCGACTTGCAGGAATCTTACATGAAATGAATCCAAGTTGGTCAGATGAG
AAACTTTTCCAAGAAGCTCGTCGCATTAATATTGCTCAATATCAATATGTTGTTTATTAT
GAATGGTTGCCATTGTTATTGGGAGAACAAAATATGTTTAAAGCTAAATTGATTTATTAT
AAAGATGGTGGTGAATATGTTGATGACTATGATGAAAATGTTGATCCATCAGCACTCAAT
GATCATGCTGCTTCTGCCTTCCGTTATTTCCATTCTGAAATTGAAGGAAATTTAGA

>g6489.t2 Gene=g6489 Length=358
MKILILIAAAVITASVDADDCVSHTYRTLDGSCNNLKHPNWGKAGTPYARLLPARYGDGI
FSPPKSKTGADLPSSRLVSTTIFDTIDSPDPNHTIVTMQFGQFVAHDMSFGGAPIHPSCC
QDGKIVSHDPLCYPIIVPNDDPVRSADGIECMNFQRTLTDRDNELDENRANQPAQQITVV
TGFLDLSLVYGNSEKELAPVREFNAGRLKMDIRNGKEWPPHNPDGDKICFVETSGETCYF
GGDPRLNQSPDLSILHIYYIREHNRLAGILHEMNPSWSDEKLFQEARRINIAQYQYVVYY
EWLPLLLGEQNMFKAKLIYYKDGGEYVDDYDENVDPSALNDHAASAFRYFHSEIEGNL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
12 g6489.t2 Gene3D G3DSA:1.10.640.10 Myeloperoxidase 9 358 3.8E-105
2 g6489.t2 PANTHER PTHR11475 OXIDASE/PEROXIDASE 6 358 3.9E-154
3 g6489.t2 PANTHER PTHR11475:SF86 PEROXIDASE 6 358 3.9E-154
5 g6489.t2 PRINTS PR00457 Animal haem peroxidase signature 50 61 1.4E-24
6 g6489.t2 PRINTS PR00457 Animal haem peroxidase signature 96 111 1.4E-24
7 g6489.t2 PRINTS PR00457 Animal haem peroxidase signature 239 257 1.4E-24
8 g6489.t2 PRINTS PR00457 Animal haem peroxidase signature 257 277 1.4E-24
9 g6489.t2 PRINTS PR00457 Animal haem peroxidase signature 282 308 1.4E-24
4 g6489.t2 PRINTS PR00457 Animal haem peroxidase signature 344 354 1.4E-24
1 g6489.t2 Pfam PF03098 Animal haem peroxidase 26 357 1.2E-102
14 g6489.t2 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
15 g6489.t2 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
16 g6489.t2 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 13 -
17 g6489.t2 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 18 -
13 g6489.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 358 -
19 g6489.t2 ProSiteProfiles PS50292 Animal heme peroxidase superfamily profile. 18 358 83.031
10 g6489.t2 SUPERFAMILY SSF48113 Heme-dependent peroxidases 21 357 1.59E-101
11 g6489.t2 SignalP_EUK SignalP-noTM SignalP-noTM 1 18 -
18 g6489.t2 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 18 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004601 peroxidase activity MF
GO:0042600 egg chorion CC
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed