Gene loci information

Transcript annotation

  • This transcript has been annotated as Peroxidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6489 g6489.t4 TSS g6489.t4 17239431 17239431
chr_2 g6489 g6489.t4 isoform g6489.t4 17239481 17241055
chr_2 g6489 g6489.t4 exon g6489.t4.exon1 17239481 17240556
chr_2 g6489 g6489.t4 cds g6489.t4.CDS1 17239481 17240556
chr_2 g6489 g6489.t4 exon g6489.t4.exon2 17240624 17240951
chr_2 g6489 g6489.t4 cds g6489.t4.CDS2 17240624 17240951
chr_2 g6489 g6489.t4 exon g6489.t4.exon3 17241013 17241055
chr_2 g6489 g6489.t4 cds g6489.t4.CDS3 17241013 17241054
chr_2 g6489 g6489.t4 TTS g6489.t4 17241574 17241574

Sequences

>g6489.t4 Gene=g6489 Length=1447
ATGAAAATTTTAATTCTTATCGCGGCGGCAGTAATAACTGCAAGTGTGGATGCAGATGAT
TGTGTTAGTCACACTTATCGAACATTAGATGGTTCATGCAACAATTTAAAACATCCTAAT
TGGGGTAAAGCTGGAACTCCATATGCTCGACTTTTGCCAGCACGTTATGGTGATGGAATT
TTCAGTCCACCAAAGTCAAAAACGGGTGCTGATTTGCCAAGCTCAAGACTTGTATCGACT
ACGATTTTTGATACTATTGATTCACCTGATCCCAATCATACAATTGTCACTATGCAATTT
GGTCAATTTGTTGCACATGATATGAGTTTTGGTGGGGCACCTATTCATCCATCATGCTGC
CAAGATGGAAAAATTGTCTCTCATGATCCATTATGTTATCCAATTATTGTTCCAAATGAC
GACCCAGTTCGCTCAGCCGATGGCATCGAATGTATGAATTTTCAACGCACATTAACCGAC
AGAGATAACGAACTTGATGAAAACCGAGCAAATCAACCTGCACAGCAGATAACAGTTGTG
ACAGGCTTTCTTGACCTTTCTCTCGTGTATGGAAACTCCGAGAAAGAATTAGCGCCCGTA
AGAGAATTTAATGCAGGACGTTTAAAGATGGATATCCGTAATGGAAAAGAATGGCCACCA
CATAACCCTGATGGTGATAAAATTTGTTTTGTTGAGACATCTGGAGAGACTTGCTACTTC
GGAGGCGACCCACGTCTAAATCAAAGTCCTGATTTATCAATTCTTCATATTTATTATATT
CGTGAGCATAATCGACTTGCAGGAATCTTACATGAAATGAATCCAAGTTGGTCAGATGAG
AAACTTTTCCAAGAAGCTCGTCGCATTAATATTGCTCAATATCAATATGTTGTTTATTAT
GAATGGTTGCCATTGTTATTGGGAGAACAAAATATGTTTAAAGCTAAATTGATTTATTAT
AAAGATGGTGGTGAATATGTTGATGACTATGATGAAAATGTTGATCCATCAGCACTCAAT
GATCATGCTGCTTCTGCCTTCCGTTATTTCCATTCTGAAATTGAAGGAAATTTAGAATTA
ATTTCAGAATCACGTGAATGCAAGAAATCAATGAAAATCAGTGATGTGTTCTTACGACCA
AAAATTTTGGAGCAAAATGATAACTTCGATTCTTTTGCACGTGGTATGGCAACTCAAAGA
TTCCAAAAACCTGACAAATACTTTGACATTGAAGTTAGAGAATTTCTTCTTAAGCATTTG
CGCAAATATGGTGATGACATTAGAGCAATTGATATTCAAAGAGGCAGAGATCATGGCATT
GCTAGTTATAACAGTTTCAGAGAATTCTGTGATCTTCCAAAAGCTACAAAATGGGAAGAT
TATTTGGATTTGATTTCTCAAGAAGATATTGATAAATTGAAATCAATTTACCCAAGCTAT
GATGACG

>g6489.t4 Gene=g6489 Length=482
MKILILIAAAVITASVDADDCVSHTYRTLDGSCNNLKHPNWGKAGTPYARLLPARYGDGI
FSPPKSKTGADLPSSRLVSTTIFDTIDSPDPNHTIVTMQFGQFVAHDMSFGGAPIHPSCC
QDGKIVSHDPLCYPIIVPNDDPVRSADGIECMNFQRTLTDRDNELDENRANQPAQQITVV
TGFLDLSLVYGNSEKELAPVREFNAGRLKMDIRNGKEWPPHNPDGDKICFVETSGETCYF
GGDPRLNQSPDLSILHIYYIREHNRLAGILHEMNPSWSDEKLFQEARRINIAQYQYVVYY
EWLPLLLGEQNMFKAKLIYYKDGGEYVDDYDENVDPSALNDHAASAFRYFHSEIEGNLEL
ISESRECKKSMKISDVFLRPKILEQNDNFDSFARGMATQRFQKPDKYFDIEVREFLLKHL
RKYGDDIRAIDIQRGRDHGIASYNSFREFCDLPKATKWEDYLDLISQEDIDKLKSIYPSY
DD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g6489.t4 Gene3D G3DSA:1.10.640.10 Myeloperoxidase 9 482 5.4E-142
2 g6489.t4 PANTHER PTHR11475 OXIDASE/PEROXIDASE 6 482 2.6E-205
3 g6489.t4 PANTHER PTHR11475:SF86 PEROXIDASE 6 482 2.6E-205
5 g6489.t4 PRINTS PR00457 Animal haem peroxidase signature 50 61 2.7E-26
6 g6489.t4 PRINTS PR00457 Animal haem peroxidase signature 96 111 2.7E-26
8 g6489.t4 PRINTS PR00457 Animal haem peroxidase signature 239 257 2.7E-26
9 g6489.t4 PRINTS PR00457 Animal haem peroxidase signature 257 277 2.7E-26
10 g6489.t4 PRINTS PR00457 Animal haem peroxidase signature 282 308 2.7E-26
4 g6489.t4 PRINTS PR00457 Animal haem peroxidase signature 344 354 2.7E-26
7 g6489.t4 PRINTS PR00457 Animal haem peroxidase signature 466 482 2.7E-26
1 g6489.t4 Pfam PF03098 Animal haem peroxidase 26 482 1.8E-139
15 g6489.t4 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
16 g6489.t4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
17 g6489.t4 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 13 -
18 g6489.t4 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 18 -
14 g6489.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 482 -
20 g6489.t4 ProSiteProfiles PS50292 Animal heme peroxidase superfamily profile. 18 482 107.717
11 g6489.t4 SUPERFAMILY SSF48113 Heme-dependent peroxidases 21 482 4.12E-133
12 g6489.t4 SignalP_EUK SignalP-noTM SignalP-noTM 1 18 -
19 g6489.t4 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 18 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004601 peroxidase activity MF
GO:0042600 egg chorion CC
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed