Gene loci information

Transcript annotation

  • This transcript has been annotated as Peroxidase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6489 g6489.t7 TSS g6489.t7 17239431 17239431
chr_2 g6489 g6489.t7 isoform g6489.t7 17239481 17241436
chr_2 g6489 g6489.t7 exon g6489.t7.exon1 17239481 17240556
chr_2 g6489 g6489.t7 cds g6489.t7.CDS1 17239481 17240556
chr_2 g6489 g6489.t7 exon g6489.t7.exon2 17240624 17240951
chr_2 g6489 g6489.t7 cds g6489.t7.CDS2 17240624 17240951
chr_2 g6489 g6489.t7 exon g6489.t7.exon3 17241055 17241320
chr_2 g6489 g6489.t7 cds g6489.t7.CDS3 17241055 17241320
chr_2 g6489 g6489.t7 exon g6489.t7.exon4 17241379 17241436
chr_2 g6489 g6489.t7 cds g6489.t7.CDS4 17241379 17241436
chr_2 g6489 g6489.t7 TTS g6489.t7 17241574 17241574

Sequences

>g6489.t7 Gene=g6489 Length=1728
ATGAAAATTTTAATTCTTATCGCGGCGGCAGTAATAACTGCAAGTGTGGATGCAGATGAT
TGTGTTAGTCACACTTATCGAACATTAGATGGTTCATGCAACAATTTAAAACATCCTAAT
TGGGGTAAAGCTGGAACTCCATATGCTCGACTTTTGCCAGCACGTTATGGTGATGGAATT
TTCAGTCCACCAAAGTCAAAAACGGGTGCTGATTTGCCAAGCTCAAGACTTGTATCGACT
ACGATTTTTGATACTATTGATTCACCTGATCCCAATCATACAATTGTCACTATGCAATTT
GGTCAATTTGTTGCACATGATATGAGTTTTGGTGGGGCACCTATTCATCCATCATGCTGC
CAAGATGGAAAAATTGTCTCTCATGATCCATTATGTTATCCAATTATTGTTCCAAATGAC
GACCCAGTTCGCTCAGCCGATGGCATCGAATGTATGAATTTTCAACGCACATTAACCGAC
AGAGATAACGAACTTGATGAAAACCGAGCAAATCAACCTGCACAGCAGATAACAGTTGTG
ACAGGCTTTCTTGACCTTTCTCTCGTGTATGGAAACTCCGAGAAAGAATTAGCGCCCGTA
AGAGAATTTAATGCAGGACGTTTAAAGATGGATATCCGTAATGGAAAAGAATGGCCACCA
CATAACCCTGATGGTGATAAAATTTGTTTTGTTGAGACATCTGGAGAGACTTGCTACTTC
GGAGGCGACCCACGTCTAAATCAAAGTCCTGATTTATCAATTCTTCATATTTATTATATT
CGTGAGCATAATCGACTTGCAGGAATCTTACATGAAATGAATCCAAGTTGGTCAGATGAG
AAACTTTTCCAAGAAGCTCGTCGCATTAATATTGCTCAATATCAATATGTTGTTTATTAT
GAATGGTTGCCATTGTTATTGGGAGAACAAAATATGTTTAAAGCTAAATTGATTTATTAT
AAAGATGGTGGTGAATATGTTGATGACTATGATGAAAATGTTGATCCATCAGCACTCAAT
GATCATGCTGCTTCTGCCTTCCGTTATTTCCATTCTGAAATTGAAGGAAATTTAGAATTA
ATTTCAGAATCACGTGAATGCAAGAAATCAATGAAAATCAGTGATGTGTTCTTACGACCA
AAAATTTTGGAGCAAAATGATAACTTCGATTCTTTTGCACGTGGTATGGCAACTCAAAGA
TTCCAAAAACCTGACAAATACTTTGACATTGAAGTTAGAGAATTTCTTCTTAAGCATTTG
CGCAAATATGGTGATGACATTAGAGCAATTGATATTCAAAGAGGCAGAGATCATGGCATT
GCTAGTTATAACAGTTTCAGAGAATTCTGTGATCTTCCAAAAGCTACAAAATGGGAAGAT
TATTTGGATTTGATTTCTCAAGAAGTTGACTTGTCAGTTGGTGGAATTCTTGAAAAACGT
GTTGATAAATCAACTTTAACTAATCCAACTTATTATTGCATTTATATGAAACAATTTTAT
AATACTCGTGTTGGTGATCGCTATTGGTTTGAAAGAAGTGATCCCGAATTTGCATTTACC
ACATCACAATTGGCTGAAATAAGAAAATCAAGCATGTCGAGAATTTTCTGTGACAATGGT
AATAATATTTTGAGTATGCAACCAAATGCCTTCGTTGTTCCATCTGAAAGCAACAAAGTC
ATTCCATGCACAGAAATTCCAGCTATTGATTACACTTTATGGCGAGAT

>g6489.t7 Gene=g6489 Length=576
MKILILIAAAVITASVDADDCVSHTYRTLDGSCNNLKHPNWGKAGTPYARLLPARYGDGI
FSPPKSKTGADLPSSRLVSTTIFDTIDSPDPNHTIVTMQFGQFVAHDMSFGGAPIHPSCC
QDGKIVSHDPLCYPIIVPNDDPVRSADGIECMNFQRTLTDRDNELDENRANQPAQQITVV
TGFLDLSLVYGNSEKELAPVREFNAGRLKMDIRNGKEWPPHNPDGDKICFVETSGETCYF
GGDPRLNQSPDLSILHIYYIREHNRLAGILHEMNPSWSDEKLFQEARRINIAQYQYVVYY
EWLPLLLGEQNMFKAKLIYYKDGGEYVDDYDENVDPSALNDHAASAFRYFHSEIEGNLEL
ISESRECKKSMKISDVFLRPKILEQNDNFDSFARGMATQRFQKPDKYFDIEVREFLLKHL
RKYGDDIRAIDIQRGRDHGIASYNSFREFCDLPKATKWEDYLDLISQEVDLSVGGILEKR
VDKSTLTNPTYYCIYMKQFYNTRVGDRYWFERSDPEFAFTTSQLAEIRKSSMSRIFCDNG
NNILSMQPNAFVVPSESNKVIPCTEIPAIDYTLWRD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g6489.t7 CDD cd09823 peroxinectin_like 174 539 1.88772E-164
13 g6489.t7 Gene3D G3DSA:1.10.640.10 Myeloperoxidase 9 576 2.8E-174
2 g6489.t7 PANTHER PTHR11475 OXIDASE/PEROXIDASE 6 575 5.2E-243
3 g6489.t7 PANTHER PTHR11475:SF86 PEROXIDASE 6 575 5.2E-243
5 g6489.t7 PRINTS PR00457 Animal haem peroxidase signature 50 61 3.3E-28
6 g6489.t7 PRINTS PR00457 Animal haem peroxidase signature 96 111 3.3E-28
8 g6489.t7 PRINTS PR00457 Animal haem peroxidase signature 239 257 3.3E-28
9 g6489.t7 PRINTS PR00457 Animal haem peroxidase signature 257 277 3.3E-28
10 g6489.t7 PRINTS PR00457 Animal haem peroxidase signature 282 308 3.3E-28
4 g6489.t7 PRINTS PR00457 Animal haem peroxidase signature 344 354 3.3E-28
7 g6489.t7 PRINTS PR00457 Animal haem peroxidase signature 527 541 3.3E-28
1 g6489.t7 Pfam PF03098 Animal haem peroxidase 26 551 3.7E-159
15 g6489.t7 Phobius SIGNAL_PEPTIDE Signal peptide region 1 18 -
16 g6489.t7 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide. 1 2 -
17 g6489.t7 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide. 3 13 -
18 g6489.t7 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide. 14 18 -
14 g6489.t7 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 19 576 -
21 g6489.t7 ProSiteProfiles PS50292 Animal heme peroxidase superfamily profile. 18 576 122.36
11 g6489.t7 SUPERFAMILY SSF48113 Heme-dependent peroxidases 21 576 3.41E-160
12 g6489.t7 SignalP_EUK SignalP-noTM SignalP-noTM 1 18 -
20 g6489.t7 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM 1 18 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0006979 response to oxidative stress BP
GO:0020037 heme binding MF
GO:0004601 peroxidase activity MF
GO:0042600 egg chorion CC
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed