General information for g6489.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peroxidase.
Parent gene
- The parent gene g6489 is located on chr_2: 17243932..17249327 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6489 | g6489.t8 | isoform | g6489.t8 | 17240700 | 17241436 |
| chr_2 | g6489 | g6489.t8 | exon | g6489.t8.exon1 | 17240700 | 17240951 |
| chr_2 | g6489 | g6489.t8 | cds | g6489.t8.CDS1 | 17240733 | 17240951 |
| chr_2 | g6489 | g6489.t8 | exon | g6489.t8.exon2 | 17241013 | 17241320 |
| chr_2 | g6489 | g6489.t8 | cds | g6489.t8.CDS2 | 17241013 | 17241320 |
| chr_2 | g6489 | g6489.t8 | exon | g6489.t8.exon3 | 17241379 | 17241436 |
| chr_2 | g6489 | g6489.t8 | cds | g6489.t8.CDS3 | 17241379 | 17241436 |
| chr_2 | g6489 | g6489.t8 | TTS | g6489.t8 | 17241574 | 17241574 |
| chr_2 | g6489 | g6489.t8 | TSS | g6489.t8 | NA | NA |
Sequences
>g6489.t8 Gene=g6489 Length=618
CAAAATGATAACTTCGATTCTTTTGCACGTGGTATGGCAACTCAAAGATTCCAAAAACCT
GACAAATACTTTGACATTGAAGTTAGAGAATTTCTTCTTAAGCATTTGCGCAAATATGGT
GATGACATTAGAGCAATTGATATTCAAAGAGGCAGAGATCATGGCATTGCTAGTTATAAC
AGTTTCAGAGAATTCTGTGATCTTCCAAAAGCTACAAAATGGGAAGATTATTTGGATTTG
ATTTCTCAAGAAGATATTGATAAATTGAAATCAATTTACCCAAGCTATGATGACGTTGAC
TTGTCAGTTGGTGGAATTCTTGAAAAACGTGTTGATAAATCAACTTTAACTAATCCAACT
TATTATTGCATTTATATGAAACAATTTTATAATACTCGTGTTGGTGATCGCTATTGGTTT
GAAAGAAGTGATCCCGAATTTGCATTTACCACATCACAATTGGCTGAAATAAGAAAATCA
AGCATGTCGAGAATTTTCTGTGACAATGGTAATAATATTTTGAGTATGCAACCAAATGCC
TTCGTTGTTCCATCTGAAAGCAACAAAGTCATTCCATGCACAGAAATTCCAGCTATTGAT
TACACTTTATGGCGAGAT
>g6489.t8 Gene=g6489 Length=195
MATQRFQKPDKYFDIEVREFLLKHLRKYGDDIRAIDIQRGRDHGIASYNSFREFCDLPKA
TKWEDYLDLISQEDIDKLKSIYPSYDDVDLSVGGILEKRVDKSTLTNPTYYCIYMKQFYN
TRVGDRYWFERSDPEFAFTTSQLAEIRKSSMSRIFCDNGNNILSMQPNAFVVPSESNKVI
PCTEIPAIDYTLWRD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6489.t8 | Gene3D | G3DSA:1.10.640.10 | Myeloperoxidase | 1 | 195 | 0.000 |
| 2 | g6489.t8 | PANTHER | PTHR11475 | OXIDASE/PEROXIDASE | 1 | 194 | 0.000 |
| 3 | g6489.t8 | PANTHER | PTHR11475:SF86 | PEROXIDASE | 1 | 194 | 0.000 |
| 1 | g6489.t8 | Pfam | PF03098 | Animal haem peroxidase | 1 | 170 | 0.000 |
| 6 | g6489.t8 | ProSiteProfiles | PS50292 | Animal heme peroxidase superfamily profile. | 1 | 195 | 55.614 |
| 4 | g6489.t8 | SUPERFAMILY | SSF48113 | Heme-dependent peroxidases | 1 | 195 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006979 | response to oxidative stress | BP |
| GO:0020037 | heme binding | MF |
| GO:0004601 | peroxidase activity | MF |
| GO:0042600 | egg chorion | CC |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed