General information for g651.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glycosyltransferase 25 family member.
Parent gene
- The parent gene g651 is located on chr_3: 5002030..5004400 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g651 | g651.t2 | isoform | g651.t2 | 5001833 | 5002612 |
| chr_3 | g651 | g651.t2 | exon | g651.t2.exon1 | 5001833 | 5002612 |
| chr_3 | g651 | g651.t2 | TTS | g651.t2 | 5001848 | 5001848 |
| chr_3 | g651 | g651.t2 | cds | g651.t2.CDS1 | 5002030 | 5002572 |
| chr_3 | g651 | g651.t2 | TSS | g651.t2 | NA | NA |
Sequences
>g651.t2 Gene=g651 Length=780
AGTAGGATGTTTTCTCAGTCATTATACAATTTGGCAACGAATGATTGATAATAATCTCAA
TGAAGTTTTAGTACTTGAAGATGACATTAAATTTGAGCCATATTTTAGAGAGAGTGCAAT
TGAATTAATGAAAGAAGCACGCAAAATTGGTGGCTATGATTTAATTTATTTTGGAAGAAA
AAGACTGCAAGATAAAGAAGAATTTATTGAACAAAGTAACAATTTTGTCAAGGTTTCTTA
TACATATTGGACACTTGGTTATGTGTTGACACTTCAAGGAGCTAAAAAATTACTTGCTGC
TGAACCACTTAAGCGACTTCTTCCAGTTGATGAATTTCTTCCAATTATGTTTGATCAACA
TCCGAATGATACATGGAAAATGAATTATAATAACAGAAATTTAGTTGCATGGAGTGTTAA
TCCACTTTTACTATTCCCAACACATTATACAGGTGAAGAAGGTTACATTTCAGACACAGA
AGACTCGAAACAACTTGAAAGAGATATTTCAGAAGATCAAGCAATTCAAAATGTTAAGGA
AAACATTCTACATCATCGTCATCATGATTCTAGTGAATTTTAATGTGAGTTTAGGTATGA
AATTCAGTCATTTCTGAATTAAAAATTATATGCCATAAAATTGATACCAAAAACATATTT
TTAAGATGAAAATCTCTTTATTTGCATTTATTTTAAATGTGTGCCTTTATAAACCTCAAA
ACAATCCATTTTCAACAATGAATTTAAATAAAAAATATTCTAGACAAAAATTTTAGTTTT
>g651.t2 Gene=g651 Length=180
MIDNNLNEVLVLEDDIKFEPYFRESAIELMKEARKIGGYDLIYFGRKRLQDKEEFIEQSN
NFVKVSYTYWTLGYVLTLQGAKKLLAAEPLKRLLPVDEFLPIMFDQHPNDTWKMNYNNRN
LVAWSVNPLLLFPTHYTGEEGYISDTEDSKQLERDISEDQAIQNVKENILHHRHHDSSEF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g651.t2 | PANTHER | PTHR10730 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER | 2 | 156 | 0 |
| 3 | g651.t2 | PANTHER | PTHR10730:SF28 | PROCOLLAGEN GALACTOSYLTRANSFERASE 1 | 2 | 156 | 0 |
| 1 | g651.t2 | Pfam | PF01755 | Glycosyltransferase family 25 (LPS biosynthesis protein) | 1 | 99 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
