General information for g651.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glycosyltransferase 25 family member.
Parent gene
- The parent gene g651 is located on chr_3: 5002030..5004400 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g651 | g651.t5 | TTS | g651.t5 | 5001848 | 5001848 |
| chr_3 | g651 | g651.t5 | isoform | g651.t5 | 5002030 | 5003942 |
| chr_3 | g651 | g651.t5 | exon | g651.t5.exon1 | 5002030 | 5003260 |
| chr_3 | g651 | g651.t5 | cds | g651.t5.CDS1 | 5002030 | 5003260 |
| chr_3 | g651 | g651.t5 | exon | g651.t5.exon2 | 5003325 | 5003440 |
| chr_3 | g651 | g651.t5 | cds | g651.t5.CDS2 | 5003325 | 5003440 |
| chr_3 | g651 | g651.t5 | exon | g651.t5.exon3 | 5003497 | 5003942 |
| chr_3 | g651 | g651.t5 | cds | g651.t5.CDS3 | 5003497 | 5003883 |
| chr_3 | g651 | g651.t5 | TSS | g651.t5 | 5004011 | 5004011 |
Sequences
>g651.t5 Gene=g651 Length=1793
TTAAATACTCAACAAATAGTGACAATGCAAGTGATGAAAAGACAAAAGAAAGTGTAGAGA
TGTTGAAAAAGATGAGCATAGTCAGTGATGATAGTCATTTGTATAAAAAACCAACAGTTT
TGATAGTTAGCTTAATAAGAAACAAGGCACATACATTGCCATTGTTTTTAACATATTTAG
AAGAACAACAGTATCCAAAAGATAGAATTTCATTGTGGTTGATAACAGATCATAATGAAG
ACAATAGCAGGGAAATTTTAGAAGTTTGGTTAACAAAAGTCAAAAATTTCTATCACTCAA
TAAATTATCAACATGATGATAGCGAAAAAATTAGAAAAGGTGAATCGAATTTGACCCATT
GGCCGGAAGAGAGATTTAAAGATTTAATTAAAATGAAAGAACAAGCGTTAGAGTATGCTC
GACAATCATGGGCTGATTATGTTTTTTTTTTGGATGCAGATGTGTTTTTAACGACTGCCA
ATATTTTAGATACATTGATTACTTTAAATAAACCAATCGTTGCTCCAATGCTCGTATCTG
AAGGTTTATACAGTAATTTTTGGTGTGGAATGTCATCAGATTATTATTATAGACGAACTG
AAAATTACAAGAAAATTCGTCAGTATGACTTGCTTGGTGAACATAAAGTTCCAATGGTTC
ATAGTGCAGTACTAGTTGATCTCAAAAGAATCTCAAGCGATTTCCTAACTTTCAATGCAA
CGACTCTTAATCATTTTTATACAAACAAACATTTCGATGGTCCAATTGATGATATCATTA
TTTTTGCAATTGCTGCCAACTTCTCAAATACTGAAATGTTTATTTCAAATTCAAGATTTT
ATGGATTTATTCTTGTGCCACTCGATCAAGAAGATAAGATCGAAAAAGATTTTCAGCAGC
TGGTTAATGCCAAAGTTTCAATCATAAATCATTACGATGAAATTCACATTCTTCCAGAAC
TTCAAAAATTTGCCATTTATCCAGAATTAAGTAAATTATCATTCTCAGAAATTTTTATGA
TAAATTTGAAACGACGAACAGAGAGAAAATTGAGAATGGAAATGACATTAAGGGAATTGG
GAATTGATTATACATATTTTGAGGCAATTGATGGAAAGAAAATAACGAGTGAAACTTTAG
TCGAAAGAGGAATCAAATTCATGCCAGAATATGAAGATCCTTATCATAAGAGACCAATGA
AAATGGGTGAAGTAGGATGTTTTCTCAGTCATTATACAATTTGGCAACGAATGATTGATA
ATAATCTCAATGAAGTTTTAGTACTTGAAGATGACATTAAATTTGAGCCATATTTTAGAG
AGAGTGCAATTGAATTAATGAAAGAAGCACGCAAAATTGGTGGCTATGATTTAATTTATT
TTGGAAGAAAAAGACTGCAAGATAAAGAAGAATTTATTGAACAAAGTAACAATTTTGTCA
AGGTTTCTTATACATATTGGACACTTGGTTATGTGTTGACACTTCAAGGAGCTAAAAAAT
TACTTGCTGCTGAACCACTTAAGCGACTTCTTCCAGTTGATGAATTTCTTCCAATTATGT
TTGATCAACATCCGAATGATACATGGAAAATGAATTATAATAACAGAAATTTAGTTGCAT
GGAGTGTTAATCCACTTTTACTATTCCCAACACATTATACAGGTGAAGAAGGTTACATTT
CAGACACAGAAGACTCGAAACAACTTGAAAGAGATATTTCAGAAGATCAAGCAATTCAAA
ATGTTAAGGAAAACATTCTACATCATCGTCATCATGATTCTAGTGAATTTTAA
>g651.t5 Gene=g651 Length=577
MLKKMSIVSDDSHLYKKPTVLIVSLIRNKAHTLPLFLTYLEEQQYPKDRISLWLITDHNE
DNSREILEVWLTKVKNFYHSINYQHDDSEKIRKGESNLTHWPEERFKDLIKMKEQALEYA
RQSWADYVFFLDADVFLTTANILDTLITLNKPIVAPMLVSEGLYSNFWCGMSSDYYYRRT
ENYKKIRQYDLLGEHKVPMVHSAVLVDLKRISSDFLTFNATTLNHFYTNKHFDGPIDDII
IFAIAANFSNTEMFISNSRFYGFILVPLDQEDKIEKDFQQLVNAKVSIINHYDEIHILPE
LQKFAIYPELSKLSFSEIFMINLKRRTERKLRMEMTLRELGIDYTYFEAIDGKKITSETL
VERGIKFMPEYEDPYHKRPMKMGEVGCFLSHYTIWQRMIDNNLNEVLVLEDDIKFEPYFR
ESAIELMKEARKIGGYDLIYFGRKRLQDKEEFIEQSNNFVKVSYTYWTLGYVLTLQGAKK
LLAAEPLKRLLPVDEFLPIMFDQHPNDTWKMNYNNRNLVAWSVNPLLLFPTHYTGEEGYI
SDTEDSKQLERDISEDQAIQNVKENILHHRHHDSSEF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g651.t5 | CDD | cd06532 | Glyco_transf_25 | 317 | 497 | 0 |
| 6 | g651.t5 | Gene3D | G3DSA:3.90.550.10 | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 2 | 205 | 0 |
| 3 | g651.t5 | PANTHER | PTHR10730:SF8 | PROCOLLAGEN GALACTOSYLTRANSFERASE 2 | 14 | 553 | 0 |
| 4 | g651.t5 | PANTHER | PTHR10730 | PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER | 14 | 553 | 0 |
| 2 | g651.t5 | Pfam | PF03452 | Anp1 | 11 | 160 | 0 |
| 1 | g651.t5 | Pfam | PF01755 | Glycosyltransferase family 25 (LPS biosynthesis protein) | 316 | 496 | 0 |
| 5 | g651.t5 | SUPERFAMILY | SSF53448 | Nucleotide-diphospho-sugar transferases | 16 | 203 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K11703 (collagen beta-1,O-galactosyltransferase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
