General information for g652.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g652 is located on chr_3: 5010815..5011457 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g652 | g652.t2 | isoform | g652.t2 | 5006706 | 5007570 |
| chr_3 | g652 | g652.t2 | exon | g652.t2.exon1 | 5006706 | 5007570 |
| chr_3 | g652 | g652.t2 | cds | g652.t2.CDS1 | 5006741 | 5007568 |
| chr_3 | g652 | g652.t2 | TTS | g652.t2 | 5008247 | 5008247 |
| chr_3 | g652 | g652.t2 | TSS | g652.t2 | NA | NA |
Sequences
>g652.t2 Gene=g652 Length=865
ATGTTTCAACAGGTTTTTGTTTTGGATGTCTATCAATGTATTGTAAAGACTGTTTAGATG
CTCAAAATTCTGCATTGAGACAAGTCGAAAGTTTGCTCACTCGTCTCGAAGCTGCTGAAA
ATTTATTTCCATCAAACAAAGCATTTGGTGCGCATTTTCAACTCTACAAATCAGAGGAAT
TTGTAAATCGTGTCAAATGTATGTGTTTGTGGTATAACATGACACGACATCATCGTTTGA
AATTGACAATATTGGGAAAATTCCTAGCAAAACTACAAGGTAAAGAATACAAATGGCCAT
TAGTTGATTCAGATAGCAGCAGTGGTGCATCATCAATACAAGAAGAAACAGACTCAGCTC
GTGGTACAGCAAGTGCTGAATGTAAAACAATAAAAGATTGTCCAAAAGTTCAATTTTTAG
ATGTCGATCAAGTTGATCAAGCTAGTGCAACTGATAGTGCAAATAGTGAAGAGTCAAATA
GAAATGATAATAGTACCAATAGCATATTTCATCCGATGTATGAATATGGAAAAATTCTAA
ATTCCTTAACTGATTTAAGTTGGAACAAACTTGGCTCAAGTGAAGATGTACATAAAAAAT
TCCCAACTTCACCATATCGTAAATTCATTGAAAATGTACTTAAAAGTCGTGGACTTGGTA
AATCACTCACGTTTCTTCACAGACTGCATAATGTTGTCCTTCGAAAGGCTCATTTGACAC
TTGAAAAACCTGGAACTGAAGATGAAAATGAATTTGAGCAATTTGATGAAGATGAAATTC
CAAATATTGAGCCACCAATGGATGCTGAAGAGGCTAATGAACTCCGTCGTTATGGCGTAT
GGAGCGATGAATATAAACAATTATC
>g652.t2 Gene=g652 Length=276
MYCKDCLDAQNSALRQVESLLTRLEAAENLFPSNKAFGAHFQLYKSEEFVNRVKCMCLWY
NMTRHHRLKLTILGKFLAKLQGKEYKWPLVDSDSSSGASSIQEETDSARGTASAECKTIK
DCPKVQFLDVDQVDQASATDSANSEESNRNDNSTNSIFHPMYEYGKILNSLTDLSWNKLG
SSEDVHKKFPTSPYRKFIENVLKSRGLGKSLTFLHRLHNVVLRKAHLTLEKPGTEDENEF
EQFDEDEIPNIEPPMDAEEANELRRYGVWSDEYKQL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g652.t2 | Coils | Coil | Coil | 7 | 30 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
