General information for g6529.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6529 is located on chr_2: 17490748..17491982 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6529 | g6529.t2 | TTS | g6529.t2 | 17490077 | 17490077 |
| chr_2 | g6529 | g6529.t2 | isoform | g6529.t2 | 17490343 | 17491982 |
| chr_2 | g6529 | g6529.t2 | exon | g6529.t2.exon1 | 17490343 | 17490446 |
| chr_2 | g6529 | g6529.t2 | cds | g6529.t2.CDS1 | 17490343 | 17490446 |
| chr_2 | g6529 | g6529.t2 | exon | g6529.t2.exon2 | 17490516 | 17490609 |
| chr_2 | g6529 | g6529.t2 | cds | g6529.t2.CDS2 | 17490516 | 17490609 |
| chr_2 | g6529 | g6529.t2 | exon | g6529.t2.exon3 | 17490661 | 17490782 |
| chr_2 | g6529 | g6529.t2 | cds | g6529.t2.CDS3 | 17490661 | 17490782 |
| chr_2 | g6529 | g6529.t2 | exon | g6529.t2.exon4 | 17490841 | 17490939 |
| chr_2 | g6529 | g6529.t2 | cds | g6529.t2.CDS4 | 17490841 | 17490907 |
| chr_2 | g6529 | g6529.t2 | exon | g6529.t2.exon5 | 17491042 | 17491216 |
| chr_2 | g6529 | g6529.t2 | exon | g6529.t2.exon6 | 17491272 | 17491982 |
| chr_2 | g6529 | g6529.t2 | TSS | g6529.t2 | 17492018 | 17492018 |
Sequences
>g6529.t2 Gene=g6529 Length=1305
ATGGAAGCAATAAATAGTGATGTTATTGAAAGACGTCGACCAATTCGACGGAATGACTCT
ATGTCTACAATTGCGAGTTCAGCTGCAGCTGCACAAGTTCAACACATAGAAAATATGCAG
CAAGTGCAGCAATTCACCACTTTAAATAACAATGATAATCAAATTTTTCCAACAAATAAC
CAAACTAGCTTAAAATTTGAAAACAGTGAAGGAGTTCATGTTGGCAATATAATTAACCAC
TATTATCAGACTGTACCACCTATAGGTAATTTTTTTTTCATAAATTCATTAAAACAGCAA
TAATAAATTGAAAAAACTTCAGTTTTAAACAATAAAGAAGCACGAAAAAGTTCTCAAAGT
AACTCAAGCTTAACAGAATCATTCAAAATTGCGAAAAAATGTTTTATCAGCAATAATAGA
AGAAGAAATGTTTTGATAATAGCAATCACGATAAGCACTGTTGTATTGATATCAATTATT
ATTCCAATTATATATTTCACACTCACTGATAATGACAAAAATAACAATCCAGATGATAAT
ACTACTACTATTACAACTTCTACTACTTCTGCATCCGAAGTGCCTTCAGATTTATTAATT
ACAAGAGAAGAATGGAATGCAGATAGTCCCAAAGATGGGATTAAAAAATTAATTGGACCA
ATAAAAAGAATTATTGTAGCTCATACAGGAGGAAATTCATGCAATACTATGGATGAATGT
AAAACACTTGTGAAAAAAATTCAAACAGAAAATTCAGACCTTGATGATATTCCATATAAT
TTTTTGATTGGTAATGATGGAAAAGTTTATGAAGGAAGAGGGTTTGAGTTTCAAGGACAA
CATACTTCAAATTTATATGGTACTGAATTTAATTCAATTGGAATTTAAGATTATTTAATA
TTTTCTCAAGATGATTTAATGAATACAGATATTAAATCTAGTGCTCTAAATGAAGCCTTT
TCAAATTTTGAAAATTTTTTACCTCTTCATCCAATTTTTAAAAGAAAAGACTGGTCCACT
GAACAAAGAACAAATGAAAAAAAATTCGATGAAGCAAAAGATTGGGTTGTATTGACTCAT
ACTGATACTGAGTCTTGCGGTGACTTGATAGAATGTGCTAATATAGCCAAAGAATTGCAA
ATAAATGCTATACAAAATGGCTCCATTGATATTCCTTATAATTTCCTAATTGGAGACAAT
GAAATTATCTTTGAAGGAAGAGGTTGGGATGTTCAGTCAGAATTTTCAAAAGATTGTTGC
ATCCAATTGCAATTTCGATTGCTTTCATCGGTAATTATAATGTGA
>g6529.t2 Gene=g6529 Length=128
MNTDIKSSALNEAFSNFENFLPLHPIFKRKDWSTEQRTNEKKFDEAKDWVVLTHTDTESC
GDLIECANIAKELQINAIQNGSIDIPYNFLIGDNEIIFEGRGWDVQSEFSKDCCIQLQFR
LLSSVIIM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6529.t2 | CDD | cd06583 | PGRP | 48 | 107 | 0.0e+00 |
| 4 | g6529.t2 | Gene3D | G3DSA:3.40.80.10 | Lysozyme | 23 | 122 | 0.0e+00 |
| 1 | g6529.t2 | PANTHER | PTHR11022 | PEPTIDOGLYCAN RECOGNITION PROTEIN | 9 | 107 | 0.0e+00 |
| 3 | g6529.t2 | SMART | SM00701 | pgrp | 24 | 126 | 2.5e-05 |
| 2 | g6529.t2 | SUPERFAMILY | SSF55846 | N-acetylmuramoyl-L-alanine amidase-like | 24 | 108 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008745 | N-acetylmuramoyl-L-alanine amidase activity | MF |
| GO:0008270 | zinc ion binding | MF |
| GO:0009253 | peptidoglycan catabolic process | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed