General information for g6531.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Peptidoglycan recognition protein 3.
Parent gene
- The parent gene g6531 is located on chr_2: 17495816..17500303 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6531 | g6531.t1 | TTS | g6531.t1 | 17495767 | 17495767 |
| chr_2 | g6531 | g6531.t1 | isoform | g6531.t1 | 17495816 | 17500303 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon1 | 17495816 | 17496105 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS1 | 17495816 | 17496105 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon2 | 17496164 | 17496260 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS2 | 17496164 | 17496260 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon3 | 17496323 | 17496447 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS3 | 17496323 | 17496447 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon4 | 17496910 | 17497288 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS4 | 17496910 | 17497288 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon5 | 17497345 | 17497853 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS5 | 17497345 | 17497853 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon6 | 17497912 | 17498008 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS6 | 17497912 | 17498008 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon7 | 17498071 | 17498195 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS7 | 17498071 | 17498195 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon8 | 17498258 | 17499130 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS8 | 17498258 | 17499130 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon9 | 17499233 | 17499329 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS9 | 17499233 | 17499329 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon10 | 17499383 | 17499507 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS10 | 17499383 | 17499507 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon11 | 17499567 | 17499942 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS11 | 17499567 | 17499942 |
| chr_2 | g6531 | g6531.t1 | exon | g6531.t1.exon12 | 17500007 | 17500303 |
| chr_2 | g6531 | g6531.t1 | cds | g6531.t1.CDS12 | 17500007 | 17500303 |
| chr_2 | g6531 | g6531.t1 | TSS | g6531.t1 | 17500340 | 17500340 |
Sequences
>g6531.t1 Gene=g6531 Length=3390
ATGGCAAAAAGTTCAAATCGTTCAACTTCTAGAAAATGTTTTCAAGGAAAAAATAGAAAA
CGAAATATTTTGATAACGACAATTTTAATGGCATTTATTCTTGTGGTTTTAATTACTGTT
CCAATTCTTTATTTTGCATTTAAAACTGAGTCAAATTCTGATGATTTTAAATTTGAAAAC
TTAATTTCAAGAGACGAATGGAATGCTGCACCTCCTAAATCTGGCATTCCTTTTCTAGAG
AGTCCAATTAAAAGAATAATAATTGCACACACTGCAGGAGAATTTTGTGACAAAGAGAAT
GAATGTAAATTGGTCGTAAAAAGAATTCAAACAGAAAATTCACACCTTGATGATATTCCA
TATAATTTTTTGATTGGTGGTGATGGTAAAATTTATGAAGGAAGAGGATTTGAATTTCAA
GGACAACATACTTCAAATTTATATGGAACGGAATATAATTCGATTGGTATTTGTATTGCA
TTTATGGGAAATTATCAAAATACAGAACCAACTGAGAAGCAATTGAAACTTCTAACTCAA
TTTATCAATCACTTCATTCCAAGAGAAATTTATGAAGATTTTATAATTTTATCTCAAGAC
AGTTTAGTTTTTAACAATATAAAATCTGATGCATTAAATGAAGCTGTAAGCAAGTTGAAA
AACTTTTATCCCTTGCAAAAAGTGTATCGAAGGGAAGAATGGGGTGCATTAAGTCCAAGT
GCGAATCATACAAAATTCGATCATGATGTAGACATGGTTTTATTATCACACACAATAACC
CGTACTTGCTACACAATGACAAATTGTGCAGAAATGTGCAGAACAATGCAATTAACAAAT
ATGATTAATGAAGGATTAATTGATTATGCTTTTAATTTTGTTATTGGAGGCGATGGTTTT
ATTTTTGAGGGACGTGGTTGGGACAATTCTGGTGCTCATACAATAAACTTCAATTTAAAA
TCGATTGGAATTACAGTAATTGGTAATTTTGAAACAACGGAACCAACACAAGGAATGCTT
GATTCACTTTACAAACTAATGGAAGATGGTGCAGTATTGGGAAAATTAACCACTGATTTT
CAAGTGTATGGAAGACAAGATTTCAACAACATTGGCCCAGGAGAAGCTTTCATGAAACAT
ATTAGAGAATGGTGTCGATATGGAAATAGAACAGAACCATGTAATCCAAATATGGAAACT
ACTGCCAGAATAACTACAGAAGTTTTATCATCGACAACTCAAACAATTCCTGAATTTATA
GAAGTTGAATTTTTAAAAAACAGACATGATTGGAATGCAAATCCACCAAAATCAGGAATT
TCTAGATTATCTCTTCCGATTCAAAGAATTATTGTGGCACATACTGATGGAAATTCATGT
GACAATGAAGAAGATTGTAAAGCACTCGTGAAAAGAATTCAAACAGAAAATTCACATCTT
GATGATATTCCATATAATTTTTTGATTGGTAATGATGGTAAAATTTATGAAGGAAGAGGA
TTCGCTTTTGAAGGAGAACATACTTCAAATTTATATGGAACTGAATATAATTCGATTGGA
ATTTGTATTACATTTATGGGAAATTATCAATCCATTTCTCCTTCAGAGGATCAATTAAAA
CTTTTTGAAAACTTTATAGATTTTTACATTTTAAATGAAATAATTTCTGAAAATTACATA
ATTGTAATTCAGGATGATCTTATGTATAAGACTATAAGAGCAAATGCTTTGAATGAAGCT
GTCAGTAAAATGGAACATTTTTATCCCTTACAAAAGGTGTATCGAAGAGAAGAATGGAAT
GCATCATCTCCGAATGGAGAATTTACCAAGTTCAGTAATCATATAGATTTAGTATTACTT
TCACATTCAGTAACAAGGTCCTGCAATTCATCATCATCCTGTGCGGCACTTTGTAGATCT
ATGCAAAAAACTAATATCGAAACTAATGGTTGGGTTGATTTTGGATTTAATTTTGCTATC
GGTGGTGATGGATTTATTTTTGAAGCACGTGGTTTTGACAACGTCGGTGCACACATGAAA
AATTTCAATTCAAAATCAATTGGAATTGTAGCAATTGGAGATTTTAATGAAGATGAGCCG
AATCAAAAAATGCTTGATACACTTGAAAAATTTCTAGAAGATGCTGCAAAATTAGGAAAA
TTATCAGAAGATTTTAAAGTACATGGAAGACAAGATTTTGGTTCTTCGGGTCCAGGAGAA
AATATTATGAAGCATATCCGAGAATGGTGTCGATATGGAAATAGGACAGAAATTTGTGAT
ATTTCTAGTACAACTTTAATTCAAGAGACTTCAACTATTACTTTAGAATCTACAACAACT
CTATTGCTAACCACTCCTAAACCACTTCCAAAGCTAGATTTTTTAATTTCTAGAGAAGAA
TGGAATGCAAATCCACCAAACTCAGGAATTTCCCGATTGTCTTTTCCAGCTAAAGTGATT
ATTATCGCACAAACTTTAGGAAAAAACTGTTTTGATAAAAATGAATGCATAGAGCTTGTT
AAAGAAATTCAAGTTCAAAATTCAGACCTTGATGATATTCCATACAATTTTTTGATTGGT
AATGATGGTAAAATTTATGAAGGAAGAGGATTTGAATTTCAAGGACAACATACTTCAAAT
TTATATGGAACTGAGTTTAATTCAATTGGAATCTGTGTGGCATTTATGGGAAATTATCAA
ACAATTTCTCCTTCAGAGAATCAAATGAAACTTTTTGAAAACTTTATAGATTTTTATATT
TTAAATGAAATAATTTCTGAAAATTACATAATTGTAATTCAGGATGACCTAATGTATAAG
ACTATAAGAGCAAATGCTTTGAATGAAGCTGTCAGTGGCATGGAACATTTTTATCCTTTA
CAAAAGGTGTATCGAAGAGAAGAATGGAATGCATCATCTCCGAATGGAGAATTTTCCATG
TTCAGTCATCATATAGATTTAGTATTACTTTCACATTCAGTAACAAGGTCCTGCAATTCA
TCATCATCCTGTGCGGCACTTTGTAGATCTATGCAAAAAACTAATATCGAAACTAATGGT
TGGGTTGATTTTGGATTTAATTTTGCTATCGGTGGTGATGGATTTATTTTTGAAGCACGT
GGTTTTGACAACGTCGGTGCACATATGGCCAATTTCAATTCAAAATCAATTGGAATTGTA
GCAATTGGAGATTTTAATGAAGATGAGCCGACTCATGAAATGCTTGATACACTTGAAAAT
TTTCTAGAAGATGCTGCAAAATTAGGAAAATTATCAGAAGATTTTAAAATACATGGAAGA
CAAGATTTTGGTTCTTCGGGTCCAGGAGAAAATATTATGAAGCATATCCGAGAATGGTGT
CGATATGGAAATAGGACATCAACATGTTAA
>g6531.t1 Gene=g6531 Length=1129
MAKSSNRSTSRKCFQGKNRKRNILITTILMAFILVVLITVPILYFAFKTESNSDDFKFEN
LISRDEWNAAPPKSGIPFLESPIKRIIIAHTAGEFCDKENECKLVVKRIQTENSHLDDIP
YNFLIGGDGKIYEGRGFEFQGQHTSNLYGTEYNSIGICIAFMGNYQNTEPTEKQLKLLTQ
FINHFIPREIYEDFIILSQDSLVFNNIKSDALNEAVSKLKNFYPLQKVYRREEWGALSPS
ANHTKFDHDVDMVLLSHTITRTCYTMTNCAEMCRTMQLTNMINEGLIDYAFNFVIGGDGF
IFEGRGWDNSGAHTINFNLKSIGITVIGNFETTEPTQGMLDSLYKLMEDGAVLGKLTTDF
QVYGRQDFNNIGPGEAFMKHIREWCRYGNRTEPCNPNMETTARITTEVLSSTTQTIPEFI
EVEFLKNRHDWNANPPKSGISRLSLPIQRIIVAHTDGNSCDNEEDCKALVKRIQTENSHL
DDIPYNFLIGNDGKIYEGRGFAFEGEHTSNLYGTEYNSIGICITFMGNYQSISPSEDQLK
LFENFIDFYILNEIISENYIIVIQDDLMYKTIRANALNEAVSKMEHFYPLQKVYRREEWN
ASSPNGEFTKFSNHIDLVLLSHSVTRSCNSSSSCAALCRSMQKTNIETNGWVDFGFNFAI
GGDGFIFEARGFDNVGAHMKNFNSKSIGIVAIGDFNEDEPNQKMLDTLEKFLEDAAKLGK
LSEDFKVHGRQDFGSSGPGENIMKHIREWCRYGNRTEICDISSTTLIQETSTITLESTTT
LLLTTPKPLPKLDFLISREEWNANPPNSGISRLSFPAKVIIIAQTLGKNCFDKNECIELV
KEIQVQNSDLDDIPYNFLIGNDGKIYEGRGFEFQGQHTSNLYGTEFNSIGICVAFMGNYQ
TISPSENQMKLFENFIDFYILNEIISENYIIVIQDDLMYKTIRANALNEAVSGMEHFYPL
QKVYRREEWNASSPNGEFSMFSHHIDLVLLSHSVTRSCNSSSSCAALCRSMQKTNIETNG
WVDFGFNFAIGGDGFIFEARGFDNVGAHMANFNSKSIGIVAIGDFNEDEPTHEMLDTLEN
FLEDAAKLGKLSEDFKIHGRQDFGSSGPGENIMKHIREWCRYGNRTSTC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 39 | g6531.t1 | CDD | cd06583 | PGRP | 82 | 182 | 3.13182E-24 |
| 36 | g6531.t1 | CDD | cd06583 | PGRP | 250 | 370 | 6.76343E-25 |
| 34 | g6531.t1 | CDD | cd06583 | PGRP | 446 | 572 | 2.94094E-20 |
| 37 | g6531.t1 | CDD | cd06583 | PGRP | 615 | 736 | 2.2279E-21 |
| 38 | g6531.t1 | CDD | cd06583 | PGRP | 816 | 942 | 1.02577E-16 |
| 35 | g6531.t1 | CDD | cd06583 | PGRP | 985 | 1106 | 1.04166E-20 |
| 25 | g6531.t1 | Gene3D | G3DSA:3.40.80.10 | Lysozyme | 58 | 215 | 1.9E-33 |
| 27 | g6531.t1 | Gene3D | G3DSA:3.40.80.10 | Lysozyme | 217 | 393 | 9.8E-39 |
| 29 | g6531.t1 | Gene3D | G3DSA:3.40.80.10 | Lysozyme | 422 | 573 | 2.8E-33 |
| 30 | g6531.t1 | Gene3D | G3DSA:3.40.80.10 | Lysozyme | 588 | 758 | 2.4E-40 |
| 26 | g6531.t1 | Gene3D | G3DSA:3.40.80.10 | Lysozyme | 793 | 943 | 4.2E-33 |
| 28 | g6531.t1 | Gene3D | G3DSA:3.40.80.10 | Lysozyme | 959 | 1127 | 7.1E-40 |
| 12 | g6531.t1 | PANTHER | PTHR11022 | PEPTIDOGLYCAN RECOGNITION PROTEIN | 56 | 222 | 1.0E-237 |
| 18 | g6531.t1 | PANTHER | PTHR11022:SF67 | PEPTIDOGLYCAN-RECOGNITION PROTEIN LB-RELATED | 56 | 222 | 1.0E-237 |
| 10 | g6531.t1 | PANTHER | PTHR11022 | PEPTIDOGLYCAN RECOGNITION PROTEIN | 227 | 387 | 1.0E-237 |
| 16 | g6531.t1 | PANTHER | PTHR11022:SF67 | PEPTIDOGLYCAN-RECOGNITION PROTEIN LB-RELATED | 227 | 387 | 1.0E-237 |
| 9 | g6531.t1 | PANTHER | PTHR11022 | PEPTIDOGLYCAN RECOGNITION PROTEIN | 425 | 587 | 1.0E-237 |
| 15 | g6531.t1 | PANTHER | PTHR11022:SF67 | PEPTIDOGLYCAN-RECOGNITION PROTEIN LB-RELATED | 425 | 587 | 1.0E-237 |
| 8 | g6531.t1 | PANTHER | PTHR11022 | PEPTIDOGLYCAN RECOGNITION PROTEIN | 592 | 752 | 1.0E-237 |
| 14 | g6531.t1 | PANTHER | PTHR11022:SF67 | PEPTIDOGLYCAN-RECOGNITION PROTEIN LB-RELATED | 592 | 752 | 1.0E-237 |
| 11 | g6531.t1 | PANTHER | PTHR11022 | PEPTIDOGLYCAN RECOGNITION PROTEIN | 795 | 957 | 1.0E-237 |
| 17 | g6531.t1 | PANTHER | PTHR11022:SF67 | PEPTIDOGLYCAN-RECOGNITION PROTEIN LB-RELATED | 795 | 957 | 1.0E-237 |
| 7 | g6531.t1 | PANTHER | PTHR11022 | PEPTIDOGLYCAN RECOGNITION PROTEIN | 962 | 1122 | 1.0E-237 |
| 13 | g6531.t1 | PANTHER | PTHR11022:SF67 | PEPTIDOGLYCAN-RECOGNITION PROTEIN LB-RELATED | 962 | 1122 | 1.0E-237 |
| 6 | g6531.t1 | Pfam | PF01510 | N-acetylmuramoyl-L-alanine amidase | 81 | 183 | 3.6E-10 |
| 3 | g6531.t1 | Pfam | PF01510 | N-acetylmuramoyl-L-alanine amidase | 249 | 366 | 8.3E-10 |
| 1 | g6531.t1 | Pfam | PF01510 | N-acetylmuramoyl-L-alanine amidase | 446 | 546 | 3.5E-8 |
| 5 | g6531.t1 | Pfam | PF01510 | N-acetylmuramoyl-L-alanine amidase | 614 | 730 | 2.5E-9 |
| 2 | g6531.t1 | Pfam | PF01510 | N-acetylmuramoyl-L-alanine amidase | 838 | 916 | 1.5E-5 |
| 4 | g6531.t1 | Pfam | PF01510 | N-acetylmuramoyl-L-alanine amidase | 985 | 1100 | 5.0E-9 |
| 31 | g6531.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 20 | - |
| 33 | g6531.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 47 | - |
| 32 | g6531.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 48 | 1129 | - |
| 41 | g6531.t1 | SMART | SM00701 | pgrp | 59 | 203 | 3.4E-32 |
| 42 | g6531.t1 | SMART | SM00701 | pgrp | 226 | 369 | 2.7E-28 |
| 48 | g6531.t1 | SMART | SM00644 | ami_2 | 238 | 374 | 0.0094 |
| 46 | g6531.t1 | SMART | SM00701 | pgrp | 425 | 568 | 2.4E-33 |
| 43 | g6531.t1 | SMART | SM00701 | pgrp | 591 | 734 | 2.0E-34 |
| 47 | g6531.t1 | SMART | SM00644 | ami_2 | 603 | 739 | 7.9E-4 |
| 44 | g6531.t1 | SMART | SM00701 | pgrp | 795 | 938 | 4.2E-27 |
| 45 | g6531.t1 | SMART | SM00701 | pgrp | 961 | 1104 | 4.0E-33 |
| 49 | g6531.t1 | SMART | SM00644 | ami_2 | 973 | 1109 | 7.0E-4 |
| 22 | g6531.t1 | SUPERFAMILY | SSF55846 | N-acetylmuramoyl-L-alanine amidase-like | 60 | 188 | 2.09E-33 |
| 24 | g6531.t1 | SUPERFAMILY | SSF55846 | N-acetylmuramoyl-L-alanine amidase-like | 227 | 387 | 3.93E-41 |
| 23 | g6531.t1 | SUPERFAMILY | SSF55846 | N-acetylmuramoyl-L-alanine amidase-like | 426 | 589 | 1.7E-32 |
| 21 | g6531.t1 | SUPERFAMILY | SSF55846 | N-acetylmuramoyl-L-alanine amidase-like | 592 | 752 | 2.09E-41 |
| 19 | g6531.t1 | SUPERFAMILY | SSF55846 | N-acetylmuramoyl-L-alanine amidase-like | 795 | 959 | 1.01E-32 |
| 20 | g6531.t1 | SUPERFAMILY | SSF55846 | N-acetylmuramoyl-L-alanine amidase-like | 962 | 1122 | 3.4E-41 |
| 40 | g6531.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 21 | 43 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008745 | N-acetylmuramoyl-L-alanine amidase activity | MF |
| GO:0008270 | zinc ion binding | MF |
| GO:0009253 | peptidoglycan catabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K01446 (peptidoglycan recognition protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed