Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable sulfite oxidase, mitochondrial.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6540 g6540.t3 TTS g6540.t3 17550619 17550619
chr_2 g6540 g6540.t3 isoform g6540.t3 17551225 17552981
chr_2 g6540 g6540.t3 exon g6540.t3.exon1 17551225 17551432
chr_2 g6540 g6540.t3 cds g6540.t3.CDS1 17551391 17551432
chr_2 g6540 g6540.t3 exon g6540.t3.exon2 17551512 17551857
chr_2 g6540 g6540.t3 cds g6540.t3.CDS2 17551512 17551857
chr_2 g6540 g6540.t3 exon g6540.t3.exon3 17552711 17552981
chr_2 g6540 g6540.t3 cds g6540.t3.CDS3 17552711 17552739
chr_2 g6540 g6540.t3 TSS g6540.t3 17553609 17553609

Sequences

>g6540.t3 Gene=g6540 Length=825
GGAAAGTGGTATTTGGGTTACATATGGCATAGGCGTGTATGATATAACAAATTTTATTTC
TGAACATCCTGGATCAAAAAGGAATATAATGATCGGTGCTGGTGCGGCAGTAGATCCATT
TTGGCATGTTTATCAATTTCATAAGGAAGCAAAAATTTTAAAACTGTTGGAAGAATTCAG
AATCGGAAATTTAAAACCTGAAGATAGAACATCTATTGACAATCAGGGCAATCCTTATAG
CAATGAACCTGAAAGAAATCCTGAATTTATTAAATGATCACGAAATTAAAATTGTTGATG
GTTTCATGGAAGTTAAAGGCTATGCATATTCAGGTGGAGGAAATAAAATTATTCGAGTTG
ATGTTACATATGATCAGGGAAAAACATGGCATATAGCTGATTTGCAACAGCTTTCTGATG
GGGAAAATGTATCAGCCGGTCGACATTATGCATGGACCTTGTGGACAATTCGTGTACCAA
TTGAAAAAGATCAAAAATATGTTGAAGTGTGGTCAAAAGCAGTTGATTCAAATTATAACT
GTCAACCGGAAACATTTAAGAACACGTGGAATCTTCGTGGTGTTGTTGCTAATGCTTATT
CAAGAGTTGGGGTCAATAAAGCAATAAAGAATCAATCATCTGTACGTTTTTTATATTAAC
CGTATTCTCCTTGGATTTGCTGCTATTCACTTTTTGTCATGCGATAAATGTGATACATGT
TTAGTATTTTATTCACCGTGTTTTCTTGTTGGTAAAGCATGACTTTCAAAAAAACTAATC
TCAACAGACAAAAGAAATTTACACATTACTCATTACTCTTATGAC

>g6540.t3 Gene=g6540 Length=138
MNLKEILNLLNDHEIKIVDGFMEVKGYAYSGGGNKIIRVDVTYDQGKTWHIADLQQLSDG
ENVSAGRHYAWTLWTIRVPIEKDQKYVEVWSKAVDSNYNCQPETFKNTWNLRGVVANAYS
RVGVNKAIKNQSSVRFLY

Protein features from InterProScan

Transcript Database ID Name Start End E.value
9 g6540.t3 Gene3D G3DSA:2.60.40.650 - 5 127 0
2 g6540.t3 PANTHER PTHR19372 SULFITE REDUCTASE 19 127 0
4 g6540.t3 PRINTS PR00407 Eukaryotic molybdopterin domain signature 24 38 0
3 g6540.t3 PRINTS PR00407 Eukaryotic molybdopterin domain signature 38 50 0
5 g6540.t3 PRINTS PR00407 Eukaryotic molybdopterin domain signature 67 77 0
6 g6540.t3 PRINTS PR00407 Eukaryotic molybdopterin domain signature 92 104 0
7 g6540.t3 PRINTS PR00407 Eukaryotic molybdopterin domain signature 107 120 0
1 g6540.t3 Pfam PF03404 Mo-co oxidoreductase dimerisation domain 12 126 0
8 g6540.t3 SUPERFAMILY SSF81296 E set domains 12 124 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0030151 molybdenum ion binding MF
GO:0055114 NA NA
GO:0016491 oxidoreductase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed