General information for g6544.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Nipped-B protein.
Parent gene
- The parent gene g6544 is located on chr_2: 17573198..17573899 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6544 | g6544.t1 | isoform | g6544.t1 | 17566222 | 17573899 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon1 | 17566222 | 17566383 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS1 | 17566222 | 17566383 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon2 | 17566449 | 17566667 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS2 | 17566449 | 17566667 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon3 | 17566728 | 17566905 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS3 | 17566728 | 17566905 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon4 | 17566970 | 17567604 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS4 | 17566970 | 17567604 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon5 | 17567667 | 17567902 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS5 | 17567667 | 17567902 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon6 | 17567968 | 17568243 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS6 | 17567968 | 17568243 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon7 | 17568314 | 17568489 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS7 | 17568314 | 17568489 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon8 | 17568551 | 17568726 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS8 | 17568551 | 17568726 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon9 | 17568787 | 17569080 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS9 | 17568787 | 17569080 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon10 | 17569140 | 17569223 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS10 | 17569140 | 17569223 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon11 | 17569288 | 17570874 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS11 | 17569288 | 17570874 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon12 | 17570963 | 17572146 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS12 | 17570963 | 17572146 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon13 | 17572205 | 17572637 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS13 | 17572205 | 17572637 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon14 | 17572726 | 17573198 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS14 | 17572726 | 17573198 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon15 | 17573429 | 17573550 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS15 | 17573429 | 17573550 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon16 | 17573621 | 17573780 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS16 | 17573621 | 17573780 |
| chr_2 | g6544 | g6544.t1 | exon | g6544.t1.exon17 | 17573836 | 17573899 |
| chr_2 | g6544 | g6544.t1 | cds | g6544.t1.CDS17 | 17573836 | 17573899 |
| chr_2 | g6544 | g6544.t1 | TSS | g6544.t1 | 17574536 | 17574536 |
| chr_2 | g6544 | g6544.t1 | TTS | g6544.t1 | NA | NA |
Sequences
>g6544.t1 Gene=g6544 Length=6459
ATGAACGATAATAATTTAGACATACCGGTCACAACTCTAGCTGGACTAACCAGTATATCA
GATTTACTAAGCGAGTTACCATTATCTGATTCTTTGCCATCAAATAAAACATTATTATTT
CATCCGAGAGTGGCTGAAGAAGCAAACAACGTTCTTAGTCAACGGGATGATGCTCTTGCA
CAACAACTCATAAGTGCTATAGAGCAGACCAATTCAAATCATATTGAAATTAAATCAGAA
TTCTTAAAGGATGAGTCAAATGCGATTGAGGCACCACTTATGCTGAAGTTAATTCAGGCA
TCTAGACCAAATGTCTTTAATAGTAATGTTTATAATCAGAAATTCGTTAATCCCATTGCA
TCATCACATTTTCAAAATGCACAACATCAAAATCTCACTCAAAATTACTCATTAAATCCC
AATCCGATGCAAGCCACAAGTCATTTCAATGCATCATTTAATTCCACCAATAATTTTAAT
AACTTTGATCAATCCAATCAATTTCAATATTATTCACAACAACAACAACAACAACAAACC
TCTGCCGCTACCTCTGCACAATCTGATACTTTTGAAGTTGGACAAATGTATCAGCAACAA
CAGCATCAAAATATGCAATATTATGGACAAGCGATGCAGCAACCACAGCAGCAGTCCTCT
CATCAAGGAATGAATGGTCCAACTTCGACTTATCAACATACAATAAATGATCTTCTGGTG
CATCAACCATCAAATTATCAACAACAAACGAATATGTATAATAATCAGCAGCAACAGGAA
CATATTCAACAACCAATCCAACAACAAATACATCAGTCGTTTAACATCGCACAGTTATTG
GATACTAGTAGTAATTCAAATAATTTAAATCATCAGCATTCGCAAAATCTCACCGGCTTT
TATCAAAATAACATTAATAGTAGTAGTAATAATAATAGCAGTAATAGTAATAATATCAAT
AATCTCCCGCAACCGCAACAACAGCAGCAGCAACAAATGATGTCTTCCATCTGCACATCA
TCAGCATCACAACAACAAGCATTTAGCACTATAGATCAAAGTCAGCTAGATCAAAATCAT
TTTGTTTCTACCGGAAATAATCATCAGCAATTACAACAGACAATTAAAGTGGAAAATCAA
ATACCTCAATCGAAGAATAATCATATTGCACCACCACAACAACAAAATCAAACTCCAACT
CAATTTAATCAACAGCAGCAGTCTTCACAGTTCAATAATATGCATTTGCGAACAACAAAG
CAGCAAAGACCGTCGCCTGCACAAGGCACAACTGCACCCGAATCTAATCATCTCAATGTG
CAACAGCAAAAAAGCGAAGAGCACATAACTAACAGTATTACTAAGCATACGCAAAATGAA
GTAGTTGCAGCTACAACAAGTCATCAAAAAGAGTCTTCACCGCCAGCAAAGGTGCCTTCT
TTGATGGAAACCTTTGATATATCTGATGCCGATGCAATAAGTTTTAAACAATTGATTATT
CCTGTGACAAAAGTAAAAGTGAGTCCCGAAGAGCAACAGTTGTTAGCCAATTTTGATGAT
CTTAATTCGTACGATCTCTTCAATCAAATGAAAGAAGATGAGAAACGAACGCCAATGAAA
CGCAAAATTCCATTTCCACAAGATGATGTTATGGAGACGTTTAATCAGCCTAAATTGAGG
AGAATTGAGAAAAAATTGATGCCAGTTGCAACTAAAATGAGCAATGAAGAATTGATGAAA
ACAAATACGTATATTCGATTCAATTCATTTATGGAAAAGATCTTTGAGCAACTGGACGAC
ACAGAAGTTATCAGTTATGAAGATAACGATGATAATCTCGAGTGTATTTCTCCATCAATG
CTCGCAAACATCAGTGCTGAGGCAGCTAAATTAAAAGCTCGCGCATCTATTGATGCGATA
CCCGAAGATAAATTAACTCTACTAATTAATTATACAATGCGCAGTGTACATAGTGCAAAA
AATTTCTCTGCTGGACCTGATCTTTCCGATGACTTGGTAGCAGAAGATTGTCTCGATAAG
ATCTTAAATGCCATTGAAGCAGCTTTGCTAATTTGTAACATTTACACATCAAAAGACACC
AAATTCCTTCAAGAAGATAATATTGATGCTATAATTAAGTTTGTGCAATTTCAATTACGC
GAAACAATCTTTCCATCGTATGACCCAGTTTATACGATTGAGACAAAGAAGAAGGCGGAA
AAGGGACAAAATAAGAAGAAACAACATAATCAACAAAAAGGAATTACTGCACTTTATACA
AAAATTGTCGAGTTAACAAAACTCTTTGTACGGCTGTTCAATAGATTCCACTTTGTAGAT
ACAATTATTATCCACGCTAGTGCACTTGGTGTTGAGCCATTTTTCGTTGACAACATCGAA
ACTCTCCAGTTTGTATGTTTGGATCTCGTCACATCGATTTTCCAAAATGAGAAATATCAG
CACCACCGTCATAATATACTAAATGATATTCTTTCATCAGTGGATCGACTGCCGCATTCA
AAGAGGAATCTTCGGCCATACAAATTAATGAATAATGGTGGAAATATTCAAATGATGACT
GCACTCGTTCTTCAATTGATACAATGTTCTGTGTTACTTCCCGATGAGATTTATGAAGAT
GATAAAGTGTCTAGAAAGAAAAATTCTGAAAACAAAGACAAAGTTGATAGTGTTATGATG
GACAAATATAGAACAGCCACAAGTATTGGTGGTAATTTCATACAAACTTTTTTAAATAAA
TGCAAAAGTCGTTCGACAGAAACAGACTTCCGTCCACTCTTTGAGAACTTCATTCAAGAT
CTATTGACAACTGTAAACAAACCAGAGTGGCCAGCATCAGAATTATTATTGACACTTTTA
GGAACAGTACTTGTAAAATATATGTCAGATAAACATGTAGACCAATCTATTCGTGTGGCT
TCATTAGAATATCTGGGACTTGTGGCTGCTCGATTACGAAAAGATACAGTAAAATCGAGA
AATCGCGTAAAGACAATGGATGAACTAATCAAATGTATTAAAATTGAGCAAGAAAAGGAT
GGAGAAGATGACTCGGATAACGAATCAATGATTGAAATTGATCCAGAAGAGGAGAGAACA
GAATTTCTTCAAAAAATTCTTTTAGATTATTTATTGCTAAACAGTCAAGAAGAAAATCCA
GTATGGAATCACGCTCGACATTTTTATCTCGCACTTTGGTATTATGATATTCATAGAAGA
AAGAAAGAAATCGCAGAAGGTGCAAAAGGATATGCAAGTCGGAAAAAATCGAAAAAGTCA
AGTAATCGTAAAAAACATCGTGGTAGTGATGATAGTGATGAGTCAAGTGATTCTGATGTG
CAAGAAGTTCGTGATGTGGATCCAGAACTGAATCGTGAAATTTTTAAAATTCTCGATCAG
CGGAAAAAGTATTTATTGAGTAAAGTGGCACCTTTCAAGAAGACTACTCGTGATATTATT
GACCTGAAAACGTATCTCGATTATGATAATGCAAATCTCATTGCACAATATCTTGCAAGC
AAGCGACGTTTCTCACAAAGTTTTGATATTTATTTGAAGAAAATTATTTTGGTCGTTCGA
GAACCTGTTGTCGCAATTAGAACACGCGCCATGAAATGTTTAGGAAATATCGTTGAGGTA
GATCAATCGATTTTGGCAAGAAGAGATATGCAAGTTGGTGTATCTCAAAAGCTTCTCGAC
ACTGCGATCTCAGTACGTGAAGCAGCAGTTGATTTAGTTGGCAAATATATCTTAACTGAT
CGAAGTTTAGTTGATCAATATTATGAAATGATTGCTCCACGAATTCTCGACACTGGTGTG
TCAGTAAGGAAACGTGTTATCAAAATTCTCCGAGATATTTGCGTAGAATTTCCGGATCAT
CCTAAAATTCCTGATATCTGCATCAAAATGTTGCGTCGTGTAAATGATGAAGAAAACATA
CAAAAGCTTGTGATGGAAGTTTTTATGACAATGTGGTTTACTCCCTGTAGCAATAACGAT
AAAGATGGAATTCGTCGAAAATGTGATCAAATTATCGATGTAGAACTATCTTCTCAAGAA
AAAGGTTTTCATGGATTGTTGAAAACGGTATTTGAACCCAAAGAAGTGAAAGATGACACG
AAGGGAAAGAAGGAAGTTTCGCCAGTCTTGATCAACGCATGTCAACAAATTGTCAATGGA
TTAGTCAATTTAATAATGGAATATGAAAAATCTAACATTACCCGTTTGGTTGGTTGCGTC
ACAGCATTACACTCATTTGCTCAAATTCGTGCCCAGTTAATTGTAGAACATGCAATCACA
TTAGAACCATACTTGAATATCAAATGCACAACGAATGATCAAATTAAATTCTTGGCAATG
CTTGCAGAAATTTTAGAACAAGTTATTCCTCTTATGGACCACCCTGGTGATGCTTTTTTG
TCAGATTTAGAAGCTCATTTAATGGCATTGATTGTTACACAGAGACAAATTGTAGTACAC
AGTTGTGTTTCCTGTTTGGGTGCTGTTATTAATAAGCTTACAAAAAATTATCCGCTTATA
CGTGAATGCTTTGCAAAAGTTTATACAAGAGCTTTAGTGCAGACAAAAGAAAGATTAATG
AAAGATCCAAATATACCAGCTGAGCAAATCTATACACCAGTGTTTCGTCGTGGAATTTTC
ACAGTTGGCTTACTCATGAGATTCTTTGATTTTAGTCGTGTAGAAGTAAATGGATCGAAT
ACAAATGAGAGAAATCGTCTATCTCCAAACATCTGTGATGAAATTTTCGATACATTATTT
TATTTTCTCAATAGCAACATACAGCCAATTCAACGTGATATACTACAAGCACTTGGTTAT
TTCTGTGTAACAAACTGTGAATATTTAACCAGAGTAGAATTGAGGGAATATTACAATCAT
CTACTAAGCAATTACTGCGACCAAAATGAATTAAAGATAATGGTGCTGAAAAATATTCTC
TTGTATTTGATGGAAGAAGAGATAAAGATGACAAAGAATGATAAAGATTGGCAAACACAA
TCCAAGACTGAAGATCTGAAAGAAATGGGCGATATTTCATCTGGAATGTCTAGTCGAGTG
ATTCAAATTTACTTAAAAGAAATTCTTAATTCCTTCCTTAATGGAGATTTTAACGTTCGT
CTTATGGCGATGAGAGTAATCGAGATTGTTTTGCGTCAAGGTTTGGTGCATCCAGTACAA
ATTGTTCCTTATCTTATTTGCCTCAGTACTGATCCTGAAACTGAAGCATCACATAGTGCT
GATCGTCATTTACAAGAAATTGACAAACAATATCAAGGATTTGTGAATATGAAATGTCAA
CAAGGCATTCAATTGTCGTACAACTTGCAAATGACATTACAAAAGAACACGAATGGTCGT
GCTGTGCGTGGATATAGATTGCCAAAGGAAAAGAATGATGAACCACCAGGAGCACTAAAT
GGTTTTGTATATTCACTTTTACGAAATACTAAACCAAATCGACGCGCATTAGTTGGCTCC
ATGACAAAACAATTTGATGACGAAAAATCAACACTCAGCTTTATGCTTTATTTGGCTGAC
AATTTAGCTTATTTTCCTTATGTAGTTCAAGATGAACCTTTGTATTTAATACATCAAATT
GATTTATTTATTTCTGTAACTGGAACGAATTTGCTTCAAAATTTTCGCGATGGTCTTAAA
CCAAAGCCTGGTGAGGAAAACAAAGACAAAGAAAATAATCCTCTTGAAGATGAAGACGAT
GAGGAAGATCGAGATGCTTTATGCGAAAGACTGCCAGATGATACAACAGAATTACAAAAT
TGCATAACATCTGCTCAAGGCTGTATGCTCCTATTAATTCTTAAGCAGCATTTAAAGGAT
ATGTATGGCATTAATGACGCAAAAATAGCTCAATATTCACCATCAGAGAGCACAAAAATT
TACGATAAAGCAATGCAGCGTCGTAATATTCAGCCATTTAATCCCAAGGCAACAATTGCA
ATTCTCAAGGAAGAACCCAAAGTTGGTAATCAATTAAGTGATTCAGAGAAACGGGTGTTG
ATTGATAGATATTTAGAGTTTAAGCAACTGATGATTAAATTAGATCCTGATGAAGAGGCT
GATGATGATGAAGATGGTAAACCAAAACAATCACAAAAGAATTCAGCAACAATAGTGCCC
TCAAACCAACAGCCTATAGAAGTAATGAGCAATGATTCAACTGTTAATAATGTTCATATG
AATAATGTACAAATCAACTTGACTCGCGTTAGCTTACCTCCTGAGTATCAGAACTACGAA
AAACCAATAAACGTGAATTCCATTCCTAAGCCAACACAAAAGCAGCCTTCAAAATCAAAA
ACATCAGCGAAAAAATCTTCATCGAAAAAGAAACGCAGAAAGCTATCGAGTTCTGAAGAA
GAAGATGAGAGTGATTATGATGACGATGATTATGAGTAA
>g6544.t1 Gene=g6544 Length=2152
MNDNNLDIPVTTLAGLTSISDLLSELPLSDSLPSNKTLLFHPRVAEEANNVLSQRDDALA
QQLISAIEQTNSNHIEIKSEFLKDESNAIEAPLMLKLIQASRPNVFNSNVYNQKFVNPIA
SSHFQNAQHQNLTQNYSLNPNPMQATSHFNASFNSTNNFNNFDQSNQFQYYSQQQQQQQT
SAATSAQSDTFEVGQMYQQQQHQNMQYYGQAMQQPQQQSSHQGMNGPTSTYQHTINDLLV
HQPSNYQQQTNMYNNQQQQEHIQQPIQQQIHQSFNIAQLLDTSSNSNNLNHQHSQNLTGF
YQNNINSSSNNNSSNSNNINNLPQPQQQQQQQMMSSICTSSASQQQAFSTIDQSQLDQNH
FVSTGNNHQQLQQTIKVENQIPQSKNNHIAPPQQQNQTPTQFNQQQQSSQFNNMHLRTTK
QQRPSPAQGTTAPESNHLNVQQQKSEEHITNSITKHTQNEVVAATTSHQKESSPPAKVPS
LMETFDISDADAISFKQLIIPVTKVKVSPEEQQLLANFDDLNSYDLFNQMKEDEKRTPMK
RKIPFPQDDVMETFNQPKLRRIEKKLMPVATKMSNEELMKTNTYIRFNSFMEKIFEQLDD
TEVISYEDNDDNLECISPSMLANISAEAAKLKARASIDAIPEDKLTLLINYTMRSVHSAK
NFSAGPDLSDDLVAEDCLDKILNAIEAALLICNIYTSKDTKFLQEDNIDAIIKFVQFQLR
ETIFPSYDPVYTIETKKKAEKGQNKKKQHNQQKGITALYTKIVELTKLFVRLFNRFHFVD
TIIIHASALGVEPFFVDNIETLQFVCLDLVTSIFQNEKYQHHRHNILNDILSSVDRLPHS
KRNLRPYKLMNNGGNIQMMTALVLQLIQCSVLLPDEIYEDDKVSRKKNSENKDKVDSVMM
DKYRTATSIGGNFIQTFLNKCKSRSTETDFRPLFENFIQDLLTTVNKPEWPASELLLTLL
GTVLVKYMSDKHVDQSIRVASLEYLGLVAARLRKDTVKSRNRVKTMDELIKCIKIEQEKD
GEDDSDNESMIEIDPEEERTEFLQKILLDYLLLNSQEENPVWNHARHFYLALWYYDIHRR
KKEIAEGAKGYASRKKSKKSSNRKKHRGSDDSDESSDSDVQEVRDVDPELNREIFKILDQ
RKKYLLSKVAPFKKTTRDIIDLKTYLDYDNANLIAQYLASKRRFSQSFDIYLKKIILVVR
EPVVAIRTRAMKCLGNIVEVDQSILARRDMQVGVSQKLLDTAISVREAAVDLVGKYILTD
RSLVDQYYEMIAPRILDTGVSVRKRVIKILRDICVEFPDHPKIPDICIKMLRRVNDEENI
QKLVMEVFMTMWFTPCSNNDKDGIRRKCDQIIDVELSSQEKGFHGLLKTVFEPKEVKDDT
KGKKEVSPVLINACQQIVNGLVNLIMEYEKSNITRLVGCVTALHSFAQIRAQLIVEHAIT
LEPYLNIKCTTNDQIKFLAMLAEILEQVIPLMDHPGDAFLSDLEAHLMALIVTQRQIVVH
SCVSCLGAVINKLTKNYPLIRECFAKVYTRALVQTKERLMKDPNIPAEQIYTPVFRRGIF
TVGLLMRFFDFSRVEVNGSNTNERNRLSPNICDEIFDTLFYFLNSNIQPIQRDILQALGY
FCVTNCEYLTRVELREYYNHLLSNYCDQNELKIMVLKNILLYLMEEEIKMTKNDKDWQTQ
SKTEDLKEMGDISSGMSSRVIQIYLKEILNSFLNGDFNVRLMAMRVIEIVLRQGLVHPVQ
IVPYLICLSTDPETEASHSADRHLQEIDKQYQGFVNMKCQQGIQLSYNLQMTLQKNTNGR
AVRGYRLPKEKNDEPPGALNGFVYSLLRNTKPNRRALVGSMTKQFDDEKSTLSFMLYLAD
NLAYFPYVVQDEPLYLIHQIDLFISVTGTNLLQNFRDGLKPKPGEENKDKENNPLEDEDD
EEDRDALCERLPDDTTELQNCITSAQGCMLLLILKQHLKDMYGINDAKIAQYSPSESTKI
YDKAMQRRNIQPFNPKATIAILKEEPKVGNQLSDSEKRVLIDRYLEFKQLMIKLDPDEEA
DDDEDGKPKQSQKNSATIVPSNQQPIEVMSNDSTVNNVHMNNVQINLTRVSLPPEYQNYE
KPINVNSIPKPTQKQPSKSKTSAKKSSSKKKRRKLSSSEEEDESDYDDDDYE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g6544.t1 | Coils | Coil | Coil | 2151 | 2152 | - |
| 8 | g6544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 418 | 448 | - |
| 15 | g6544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1088 | 1125 | - |
| 10 | g6544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1104 | 1125 | - |
| 11 | g6544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1897 | 1924 | - |
| 12 | g6544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2036 | 2066 | - |
| 13 | g6544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2051 | 2066 | - |
| 9 | g6544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2101 | 2122 | - |
| 14 | g6544.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 2101 | 2152 | - |
| 4 | g6544.t1 | PANTHER | PTHR21704 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED | 1 | 226 | 0.0 |
| 6 | g6544.t1 | PANTHER | PTHR21704:SF20 | NIPPED-B-LIKE PROTEIN | 1 | 226 | 0.0 |
| 3 | g6544.t1 | PANTHER | PTHR21704 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED | 313 | 2147 | 0.0 |
| 5 | g6544.t1 | PANTHER | PTHR21704:SF20 | NIPPED-B-LIKE PROTEIN | 313 | 2147 | 0.0 |
| 1 | g6544.t1 | Pfam | PF12765 | HEAT repeat associated with sister chromatid cohesion | 1212 | 1253 | 7.6E-10 |
| 2 | g6544.t1 | Pfam | PF12830 | Sister chromatid cohesion C-terminus | 1697 | 1881 | 4.4E-63 |
| 7 | g6544.t1 | SUPERFAMILY | SSF48371 | ARM repeat | 917 | 1789 | 5.5E-26 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0010468 | regulation of gene expression | BP |
| GO:0003682 | chromatin binding | MF |
KEGG
Orthology
- This transcript has been annotated with K06672 (cohesin loading factor subunit SCC2)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
