General information for g6548.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Cytohesin-2.
Parent gene
- The parent gene g6548 is located on chr_2: 17606925..17607974 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6548 | g6548.t8 | isoform | g6548.t8 | 17604097 | 17604844 |
| chr_2 | g6548 | g6548.t8 | exon | g6548.t8.exon1 | 17604097 | 17604272 |
| chr_2 | g6548 | g6548.t8 | cds | g6548.t8.CDS1 | 17604199 | 17604272 |
| chr_2 | g6548 | g6548.t8 | exon | g6548.t8.exon2 | 17604343 | 17604436 |
| chr_2 | g6548 | g6548.t8 | cds | g6548.t8.CDS2 | 17604343 | 17604436 |
| chr_2 | g6548 | g6548.t8 | exon | g6548.t8.exon3 | 17604516 | 17604623 |
| chr_2 | g6548 | g6548.t8 | cds | g6548.t8.CDS3 | 17604516 | 17604623 |
| chr_2 | g6548 | g6548.t8 | exon | g6548.t8.exon4 | 17604697 | 17604844 |
| chr_2 | g6548 | g6548.t8 | cds | g6548.t8.CDS4 | 17604697 | 17604843 |
| chr_2 | g6548 | g6548.t8 | TSS | g6548.t8 | NA | NA |
| chr_2 | g6548 | g6548.t8 | TTS | g6548.t8 | NA | NA |
Sequences
>g6548.t8 Gene=g6548 Length=526
GTGAATAACGGAGATGATTTACCACGAGAGCTTTTAGAATCACTTTACGAATCAATAAGA
ACCGAGCCATTTAAAATTCCACAAGATGATGGCAATGATTTAATGCATACATTCTTCAAT
CCCGATAAAGAAGGTTGGTTATGGAAACAAGGAGGGCGCTATAAGTCGTGGAAAAGACGA
TGGTTTATCCTTAACGATAATTGTCTTTATTACTTTGAATTTACAACTGATAAAGAACCA
AGAGGCATTATACCGCTAGAAAACATTATGGTTCGTGAGTGCAAGGCCACTGATAAAAGT
AAACCACATTGCTTTGAATTGTATGCTTCGGGTGGTGCAGAAATAATCAAGGCCTGTAAA
ACGGATTCAGAGGGCAAGGTTGTTGAGGGTAAACATACAGTTTATCGAATGTCTGCTGCT
ACTGAGGAGGAAAAGAATGAATGGATAAGACTTTTGAAACATTCAATTGCCCATAATCCG
TTTTATGACATTTTGGTACAAAGGAAGAAGAAGGCGCTTGTTAAGA
>g6548.t8 Gene=g6548 Length=141
MHTFFNPDKEGWLWKQGGRYKSWKRRWFILNDNCLYYFEFTTDKEPRGIIPLENIMVREC
KATDKSKPHCFELYASGGAEIIKACKTDSEGKVVEGKHTVYRMSAATEEEKNEWIRLLKH
SIAHNPFYDILVQRKKKALVK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6548.t8 | CDD | cd01252 | PH_GRP1-like | 5 | 125 | 0.000 |
| 6 | g6548.t8 | Gene3D | G3DSA:2.30.29.30 | - | 5 | 134 | 0.000 |
| 2 | g6548.t8 | PANTHER | PTHR10663:SF315 | CYTOHESIN 4A-RELATED | 2 | 138 | 0.000 |
| 3 | g6548.t8 | PANTHER | PTHR10663 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR | 2 | 138 | 0.000 |
| 1 | g6548.t8 | Pfam | PF00169 | PH domain | 8 | 122 | 0.000 |
| 7 | g6548.t8 | ProSiteProfiles | PS50003 | PH domain profile. | 6 | 123 | 18.613 |
| 5 | g6548.t8 | SMART | SM00233 | PH_update | 7 | 125 | 0.000 |
| 4 | g6548.t8 | SUPERFAMILY | SSF50729 | PH domain-like | 4 | 123 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed