General information for g655.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g655 is located on chr_3: 5027087..5030818 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g655 | g655.t3 | isoform | g655.t3 | 5025842 | 5026529 |
| chr_3 | g655 | g655.t3 | exon | g655.t3.exon1 | 5025842 | 5026529 |
| chr_3 | g655 | g655.t3 | cds | g655.t3.CDS1 | 5026071 | 5026529 |
| chr_3 | g655 | g655.t3 | TSS | g655.t3 | NA | NA |
| chr_3 | g655 | g655.t3 | TTS | g655.t3 | NA | NA |
Sequences
>g655.t3 Gene=g655 Length=688
AGTGAATTTAATTACATTTTAAGTTGTTCTTATAGAGAATAATATGAGTTTAAATTGAAA
TAGAAATTCAATGCACATGAATAGAAAATTTAACCAATAAATCTTTTAATATTTAAATTT
TTAATTTACAGATGAGTATTATCGATTGCTTTCAACAATTTCGTACATTTTAGTAATTTT
TGTAATAGGTGTACCAATGTGGTGGAAGTGAGAAAAAGTTGTCTCTTACATGCATGTCAT
TTATTATATCTATTTCTTAAAAAATTTCAGAACCACAGAAATACATAGAGCAGATCTCCC
ATCAAATGATATTGAAGCACTTGATGACAAACCAATTACATTTAGTATTGAAATAGGTAT
TTTTATTAATAATGATGAGAGACAAAAAGAGTTCATTGATGAGTTGGAAGTATACTTTAG
AAACAATGATATATTTGGAGCAAAATTAATTCCAATCAAACTTACCGATATGGAATTTGT
AAATATCAAAACTCCTGCCAAATTAGAACAAATTTTAAATAAGCATTATGAAATTAAAGC
CGGTAATTTGCTCGTTGCTGAATGGAAAAACTTGGAAGAAGAAATTTTAGTTACAAATGA
AAGAACAATTTTTATTTCACCAAAAGCATGTAAGATAAAATTTTACATTAAGTATGCACA
TGTGATTAATTTTTTTTATCTCCACAGC
>g655.t3 Gene=g655 Length=153
MHVIYYIYFLKNFRTTEIHRADLPSNDIEALDDKPITFSIEIGIFINNDERQKEFIDELE
VYFRNNDIFGAKLIPIKLTDMEFVNIKTPAKLEQILNKHYEIKAGNLLVAEWKNLEEEIL
VTNERTIFISPKACKIKFYIKYAHVINFFYLHS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g655.t3 | Pfam | PF10510 | Phosphatidylinositol-glycan biosynthesis class S protein | 13 | 62 | 9.7e-06 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042765 | GPI-anchor transamidase complex | CC |
| GO:0016255 | attachment of GPI anchor to protein | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
