General information for g655.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g655 is located on chr_3: 5027087..5030818 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g655 | g655.t5 | isoform | g655.t5 | 5027087 | 5027835 |
| chr_3 | g655 | g655.t5 | exon | g655.t5.exon1 | 5027087 | 5027835 |
| chr_3 | g655 | g655.t5 | cds | g655.t5.CDS1 | 5027164 | 5027706 |
| chr_3 | g655 | g655.t5 | TTS | g655.t5 | 5027804 | 5027804 |
| chr_3 | g655 | g655.t5 | TSS | g655.t5 | NA | NA |
Sequences
>g655.t5 Gene=g655 Length=749
CTTCAGATGCTGTCTGTTCATCACAATCGGATGAATCAAATAATCCACAAGAGATTTACT
TACACTCTCATGAAGTTATGGATTTTGTCTTGTATCAATTGAGAAAAATTTTTGAACTAC
AAGTTGAAATACCGTTGAATTATGCATCAATGGTTAGTTTAGAGCAAATTACACCGAGAT
TATGGGAAAAAGATATGTATTTAAGAAATGGTGCTATACATTTGATCGCCTCAGCTTCAT
CAACCCTTAAATCATTGATTAAATTGCTAGATGATATTAAAAATATTGTCATTGGTGACC
ATGTTGGAGCAGAAATTCATACAGCTTATAAGAATGTTGTTCTAGCAAAAGAGTTTTTAG
CTACAAACGATATTCATAATGCAGTGAAGCATGCACGCCTTTCTTTTATTGCTGCCGAAA
AGGCATTCAATGATCCTAGTTTGCTCGAGTTGTTATATTTTCCAGAAGAACAAAAATATG
CTATATACATTCCTTTATATTTGCCCATTATGATTCCTGTATTCTTTAGCTTCAAAGCTA
TCAAAAAATATTTTACAAAATCTAAGGAGGAAGAAACTGTTGAAAGTAATGATAATGTAG
AGTCAAAAAAGGATGATTAAAGGTAATTTAATTTAAAACCAAAGAATTCACTATGTAAAA
TGTCCGATAGTGTGGAACTGATGAATAAAAATTTTACACAAATTTTAATTTTAAAACATT
ACTAAATCAATCATTTATTTTGTTTCTTT
>g655.t5 Gene=g655 Length=180
MDFVLYQLRKIFELQVEIPLNYASMVSLEQITPRLWEKDMYLRNGAIHLIASASSTLKSL
IKLLDDIKNIVIGDHVGAEIHTAYKNVVLAKEFLATNDIHNAVKHARLSFIAAEKAFNDP
SLLELLYFPEEQKYAIYIPLYLPIMIPVFFSFKAIKKYFTKSKEEETVESNDNVESKKDD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g655.t5 | PANTHER | PTHR21072 | GPI TRANSAMIDASE COMPONENT PIG-S | 1 | 167 | 1.2E-36 |
| 1 | g655.t5 | Pfam | PF10510 | Phosphatidylinositol-glycan biosynthesis class S protein | 1 | 159 | 1.5E-43 |
| 5 | g655.t5 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 133 | - |
| 6 | g655.t5 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 134 | 155 | - |
| 4 | g655.t5 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 156 | 180 | - |
| 3 | g655.t5 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 135 | 152 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0042765 | GPI-anchor transamidase complex | CC |
| GO:0016255 | attachment of GPI anchor to protein | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
