Gene loci information

Transcript annotation

  • This transcript has been annotated as STE20-like serine/threonine-protein kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6582 g6582.t5 isoform g6582.t5 17705588 17709095
chr_2 g6582 g6582.t5 exon g6582.t5.exon1 17705588 17705590
chr_2 g6582 g6582.t5 exon g6582.t5.exon2 17706358 17706936
chr_2 g6582 g6582.t5 cds g6582.t5.CDS1 17706613 17706936
chr_2 g6582 g6582.t5 exon g6582.t5.exon3 17707001 17707263
chr_2 g6582 g6582.t5 cds g6582.t5.CDS2 17707001 17707263
chr_2 g6582 g6582.t5 exon g6582.t5.exon4 17707321 17707711
chr_2 g6582 g6582.t5 cds g6582.t5.CDS3 17707321 17707711
chr_2 g6582 g6582.t5 exon g6582.t5.exon5 17708370 17708621
chr_2 g6582 g6582.t5 cds g6582.t5.CDS4 17708370 17708621
chr_2 g6582 g6582.t5 exon g6582.t5.exon6 17708683 17709095
chr_2 g6582 g6582.t5 cds g6582.t5.CDS5 17708683 17709093
chr_2 g6582 g6582.t5 TSS g6582.t5 NA NA
chr_2 g6582 g6582.t5 TTS g6582.t5 NA NA

Sequences

>g6582.t5 Gene=g6582 Length=1901
AAGGCTGTCTGCTTAAAATATATCCTTTTCTGATTCCATTGTACAACGAATTAAGTGTCA
TTAAGAATGTATAATGAAAATAATAAGTAAGAAAATGCAGCTACAAAGATTTTAATGTTA
TTAAAATATATCAACAAAAATCATTGTAAAGGGAGAGTGAGAGAGCTAAAATATATTGCA
GAACTATTTTTTCACAGTGAAAGATTTTTTATTAGTATTTGTATTGTCAAAATAAGTGAA
TAAGTGTATTGTGCAAAAATGTCATTTTTAAATAATTTGAAAAAAGTTTTCCACTTGGGA
AGTGGAGAAACAAAAAAGAAACGCCTTTATAATAATATTCGAATGGACACAAGTCCCAAT
GATTTTTGGGACATGATTGGAGAGCTTGGCGATGGCGCATTTGGTAAAGTTTATAAAGCT
CAAAATAAAGAAACAGGACAGTATGCTGCTGCAAAAATGTGTACACTTGAGGATGAAGAA
AATTTAAGTGATCACATGGTAGAAATAGACATTTTATCAGAAATAAGACATTCGAATATT
GTAGAGCTCTATGAAGCTTTTTTTATTGATGATAAATTATGGATGTTGATTGAATATTGT
GACGGCGGTGCCTTAGATAGCATAATGGTAGAATTGGAAAAGCCTTTAACTGAGCCACAA
ATTGCATATGTAACAAAGCATATGATAGCTGGACTTAATCATTTGCATAAGAATAAAGTG
ATCCATAGAGATCTTAAAGCTGGAAATGTCCTTCTTACAATGGATGGAGGTGTAAAATTA
GCGGATTTTGGAGTGTCTGCGAAAAATAAGCATACAATGCAAAAACATGATACATTTATT
GGAACTCCATACTGGATGGCTCCTGAACTGGTTCTATGTGAGACATTTAGAGATAATCCA
TATGATTTTAAAGTTGATATTTGGTCGCTGGGCATCACATTAATTGAATTCGCGCAAATG
GAACCACCAAATAGTGAAATGTCGCCTATGCGCGTTCTATTAAAAATACAAAAAAGTGAT
CCACCCAAACTTGATCAGCCATCTAAGTGGTCGAAAGAATTCAACGACTTCCTTGCCAAA
GTGCTTATTAAAGATCCAAATCAAAGACCTGACACAGATGCTCTAATGCAATTGCCATTT
ATAAATGGGAATCTTGATCCTAAACCTGTACGCGATTTATTACTTGAATATAAAGCAGAT
GTTGTTGAAGAAGAACTTGTTGATGAAGAGGCTGAGGAGCAGCGAACGCCGGCAATTCAA
GACTTGGATGATGATTCTGCTTCCGTGCAATCACAAGAAACTGACAAACAACCAATATCA
TCAGAAACAACATTGTCCCTTTCCAAATCATCCAATACAAGTAAAGAATCAACGCCACAG
CCTGATGAGTTTTCCAAAAAATTAATTCAAGATAGTAGTGGTGGTAATAATAATAATAAT
GTCAACAATAATCATATCATAAATGAATTGCCCGAAAATGAAAAGAAGGTGATTAAACGA
GAAAAAGGACCAGCGCCTTTACCACCACCAATGGTTGCTGCTACTGCAACTACTCCTACT
CCAGCAACACCAATATCTCAAACAGAGGCATCTGATGAGACACCTTTCTCTACAGTCGTT
GAGACTCCTGTTACAAATCTCAAGATTATTGAGCAAGGTGATGATGATGAACTAAAACAC
AAAGCATTGAATGAAAAAGAAGAAATGATTGAATCACCAAGCAAAAACCAAATAAAAGAA
ATTTTACCTCCACCACCGCCAGAATTTGCCAATGAAACCACGATTGCAGCCTTTGATGGT
TATGAAAAACAACAACAACCATTATCGGTCAAAGGATTTGTAAAATCATTTGAAATCGAA
AAAGAACAGCCTAAAATACGTGAACACGTTGAGCTTAAACG

>g6582.t5 Gene=g6582 Length=547
MSFLNNLKKVFHLGSGETKKKRLYNNIRMDTSPNDFWDMIGELGDGAFGKVYKAQNKETG
QYAAAKMCTLEDEENLSDHMVEIDILSEIRHSNIVELYEAFFIDDKLWMLIEYCDGGALD
SIMVELEKPLTEPQIAYVTKHMIAGLNHLHKNKVIHRDLKAGNVLLTMDGGVKLADFGVS
AKNKHTMQKHDTFIGTPYWMAPELVLCETFRDNPYDFKVDIWSLGITLIEFAQMEPPNSE
MSPMRVLLKIQKSDPPKLDQPSKWSKEFNDFLAKVLIKDPNQRPDTDALMQLPFINGNLD
PKPVRDLLLEYKADVVEEELVDEEAEEQRTPAIQDLDDDSASVQSQETDKQPISSETTLS
LSKSSNTSKESTPQPDEFSKKLIQDSSGGNNNNNVNNNHIINELPENEKKVIKREKGPAP
LPPPMVAATATTPTPATPISQTEASDETPFSTVVETPVTNLKIIEQGDDDELKHKALNEK
EEMIESPSKNQIKEILPPPPPEFANETTIAAFDGYEKQQQPLSVKGFVKSFEIEKEQPKI
REHVELK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
7 g6582.t5 CDD cd06611 STKc_SLK_like 31 310 0.0
5 g6582.t5 Gene3D G3DSA:3.30.200.20 Phosphorylase Kinase; domain 1 17 113 2.3E-29
6 g6582.t5 Gene3D G3DSA:1.10.510.10 Transferase(Phosphotransferase) domain 1 114 325 6.7E-73
13 g6582.t5 MobiDBLite mobidb-lite consensus disorder prediction 320 377 -
12 g6582.t5 MobiDBLite mobidb-lite consensus disorder prediction 335 377 -
11 g6582.t5 MobiDBLite mobidb-lite consensus disorder prediction 432 453 -
2 g6582.t5 PANTHER PTHR46538 - 5 408 3.3E-158
3 g6582.t5 PANTHER PTHR46538:SF1 STE20 LIKE KINASE 5 408 3.3E-158
1 g6582.t5 Pfam PF00069 Protein kinase domain 40 295 8.1E-63
9 g6582.t5 ProSitePatterns PS00107 Protein kinases ATP-binding region signature. 43 66 -
8 g6582.t5 ProSitePatterns PS00108 Serine/Threonine protein kinases active-site signature. 154 166 -
14 g6582.t5 ProSiteProfiles PS50011 Protein kinase domain profile. 37 295 48.909
10 g6582.t5 SMART SM00220 serkin_6 37 295 2.1E-84
4 g6582.t5 SUPERFAMILY SSF56112 Protein kinase-like (PK-like) 33 301 1.01E-87

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0004672 protein kinase activity MF
GO:0006468 protein phosphorylation BP

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values