General information for g6583.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative STE20-like serine/threonine-protein kinase.
Parent gene
- The parent gene g6583 is located on chr_2: 17711197..17713736 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6583 | g6583.t3 | isoform | g6583.t3 | 17711197 | 17713736 |
| chr_2 | g6583 | g6583.t3 | exon | g6583.t3.exon1 | 17711197 | 17711199 |
| chr_2 | g6583 | g6583.t3 | exon | g6583.t3.exon2 | 17711262 | 17711430 |
| chr_2 | g6583 | g6583.t3 | cds | g6583.t3.CDS1 | 17711263 | 17711430 |
| chr_2 | g6583 | g6583.t3 | exon | g6583.t3.exon3 | 17711498 | 17711604 |
| chr_2 | g6583 | g6583.t3 | cds | g6583.t3.CDS2 | 17711498 | 17711604 |
| chr_2 | g6583 | g6583.t3 | exon | g6583.t3.exon4 | 17711659 | 17711791 |
| chr_2 | g6583 | g6583.t3 | cds | g6583.t3.CDS3 | 17711659 | 17711791 |
| chr_2 | g6583 | g6583.t3 | exon | g6583.t3.exon5 | 17713564 | 17713736 |
| chr_2 | g6583 | g6583.t3 | cds | g6583.t3.CDS4 | 17713564 | 17713677 |
| chr_2 | g6583 | g6583.t3 | TTS | g6583.t3 | 17713778 | 17713778 |
| chr_2 | g6583 | g6583.t3 | TSS | g6583.t3 | NA | NA |
Sequences
>g6583.t3 Gene=g6583 Length=585
AAAAATGCTTCAAAGAAAAGAAGAAGAACTAATAAAACGCCAAACTATTGAGAAACGTGC
TCTTCCAAAGAGAATTCGAGCTGAACGAAAAGCTCGTGATATGATGTTCAGAGAATCATT
AAGAATTTCTGTCCATCATGATCCTAAAGCTGAGGAAGAAAAAATTAAAAAGTTTCAAGA
GCAAGAAAAGAAACGATATATGCAAGAACAACAAAGATTTGAAACAAAACACATTAAGCA
ATTAGAGGAACTTCGTGCAAATTGTGATTCAACTATAAGGGAACTCGAGCAAATGCAAAA
TGAAAAACGAAAGGCACTGCTTGAACATGAAAGCGCCAAACTAAAAGAATGTGATGAAGC
GCTTCAAAGAGAAATGCGCGAATGGAAAGCCATGCTGATGCCAAGGAAACAGGTTTTAGA
AGACTCTTTCGCTCAACAAATTGATGAAATGGACAGTAGATATAACACTTTACCAAATTC
ATCATCTTCAATAAGGAGTAGTTTTTCATCATATTCGGACACATAAGACATGCTTGCTTT
TTTATATAAAATGACTTGATTGAAAATAAGATGTAAATAAGAAAA
>g6583.t3 Gene=g6583 Length=173
MLQRKEEELIKRQTIEKRALPKRIRAERKARDMMFRESLRISVHHDPKAEEEKIKKFQEQ
EKKRYMQEQQRFETKHIKQLEELRANCDSTIRELEQMQNEKRKALLEHESAKLKECDEAL
QREMREWKAMLMPRKQVLEDSFAQQIDEMDSRYNTLPNSSSSIRSSFSSYSDT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g6583.t3 | Coils | Coil | Coil | 48 | 75 | - |
| 6 | g6583.t3 | Coils | Coil | Coil | 77 | 126 | - |
| 5 | g6583.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 173 | - |
| 2 | g6583.t3 | PANTHER | PTHR46538:SF3 | - | 3 | 155 | 8.8E-45 |
| 3 | g6583.t3 | PANTHER | PTHR46538 | - | 3 | 155 | 8.8E-45 |
| 1 | g6583.t3 | Pfam | PF12474 | Polo kinase kinase | 3 | 109 | 2.8E-26 |
| 4 | g6583.t3 | SUPERFAMILY | SSF58113 | Apolipoprotein A-I | 44 | 154 | 1.31E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0004674 | protein serine/threonine kinase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
