General information for g6592.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6592 is located on chr_2: 17739393..17740740 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6592 | g6592.t1 | TTS | g6592.t1 | 17738650 | 17738650 |
| chr_2 | g6592 | g6592.t1 | isoform | g6592.t1 | 17739393 | 17740740 |
| chr_2 | g6592 | g6592.t1 | exon | g6592.t1.exon1 | 17739393 | 17740477 |
| chr_2 | g6592 | g6592.t1 | cds | g6592.t1.CDS1 | 17739393 | 17740477 |
| chr_2 | g6592 | g6592.t1 | exon | g6592.t1.exon2 | 17740539 | 17740740 |
| chr_2 | g6592 | g6592.t1 | cds | g6592.t1.CDS2 | 17740539 | 17740740 |
| chr_2 | g6592 | g6592.t1 | TSS | g6592.t1 | NA | NA |
Sequences
>g6592.t1 Gene=g6592 Length=1287
ATGTCAAGACGTAAGCAACGCTCTAGAGGAACAATCGATGACGATTCTGATGAAATATAT
AGAGAAAATACAGGTGGAGGAAGTTTACAAAGACCACTAGCACGATCAAAGCATTCAAAC
ATCAAACTTGACGATGATGTTTGGAGCAGTGGTGGTGGCTTAAGCAGCAAGTATTGGAAG
CAACGACCAGCAAGTGCTGGTGGAAAACAGAGTAGAAATAAAGAAATTGAATTACGTTCA
AATTATGCAACAATAAGACATCCACAGCAGCAATATCAACAAAGAAGAGATTATAATGAT
TTTGAAGATGATTTAAATGATTTTGTTATTGAACAAAGACAGGGAGATGATAGCAATAAC
AATAACAGTGTGTATTATGCGAGAAAAAAATATAGTTCGGGAAGTATCAAAACAACAAAT
TTACCCACACCATCTTCTTCAAGATCTGAGAAAAACTTGAATGAATATAGTAGCAAGCAA
TTAAGATACTCAACAACTGAGGCAGTAGAGTCAGAATCAGAAGATGATAATTTTGAAGGT
GAAAATCGAATGTCTAAGAAAACTTTAAACGTCAAAAAAAGTACGAGTAAAGATATATTT
AAAGATGATTCAAAAGAACAGTGTTTTTCAGCAAATAAAACTGATGAAAATTTTGCTAAA
AAGACACATAATGTACGTAAAAACGACTACCGATTTGAAGATCATCATCGTAAACAGGAG
TCAGCTAATCAATTAACACATGCAAGTGGAGGAAATAAATTCTCAATGGAAGGATTCGAA
AGTGATTTTAATACATCGCCAAAGCAACAAATGATTCGATCGCAACAAGAACAAAAAACT
GATTCTCATAAATTTACTTTTGAAGAAAGTGAAATCTCTCCAAGTACTGCAAAAAATGGT
AACACAATTCAACAAAAATTAAGATTCAATGAAAATGTTTCAATTTCCAAATTTGACAAA
AATGCTGCTTCTTCATCTCAGCAAATGTTTGAAGATGATTTTCTTCAATCATGGAGCCCA
GAAATATCTGGTACGAATGCAAATGTGCAAATGCAATCTAGCTTGAAAAAAAGTGGAAGT
AATTTTAGCAGACAAGAAAATATTAAAAAATCTGATTCTATTAATATCTTTGCTCGTAAA
GTTGATGAAGATCCATTTGCTAATGATGATTTTTTCAATTCTGAAGAGAAAAGTAATGTA
ATAAAAGATGATAAAGAACAAGAAGATCCTTTCGAATGGGAAAATGATAAAAATAATTTT
GCAAATTTTGATAATAAAAATATCTGA
>g6592.t1 Gene=g6592 Length=428
MSRRKQRSRGTIDDDSDEIYRENTGGGSLQRPLARSKHSNIKLDDDVWSSGGGLSSKYWK
QRPASAGGKQSRNKEIELRSNYATIRHPQQQYQQRRDYNDFEDDLNDFVIEQRQGDDSNN
NNSVYYARKKYSSGSIKTTNLPTPSSSRSEKNLNEYSSKQLRYSTTEAVESESEDDNFEG
ENRMSKKTLNVKKSTSKDIFKDDSKEQCFSANKTDENFAKKTHNVRKNDYRFEDHHRKQE
SANQLTHASGGNKFSMEGFESDFNTSPKQQMIRSQQEQKTDSHKFTFEESEISPSTAKNG
NTIQQKLRFNENVSISKFDKNAASSSQQMFEDDFLQSWSPEISGTNANVQMQSSLKKSGS
NFSRQENIKKSDSINIFARKVDEDPFANDDFFNSEEKSNVIKDDKEQEDPFEWENDKNNF
ANFDNKNI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g6592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - |
| 10 | g6592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - |
| 3 | g6592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 75 | - |
| 1 | g6592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 167 | - |
| 6 | g6592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 194 | - |
| 5 | g6592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 178 | 194 | - |
| 7 | g6592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 303 | - |
| 2 | g6592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 303 | - |
| 4 | g6592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 428 | - |
| 8 | g6592.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 415 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
