Gene loci information

Transcript annotation

  • This transcript has been not been annotated.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_3 g66 g66.t1 isoform g66.t1 472388 472698
chr_3 g66 g66.t1 exon g66.t1.exon1 472388 472518
chr_3 g66 g66.t1 cds g66.t1.CDS1 472388 472518
chr_3 g66 g66.t1 exon g66.t1.exon2 472590 472698
chr_3 g66 g66.t1 cds g66.t1.CDS2 472590 472698
chr_3 g66 g66.t1 TSS g66.t1 NA NA
chr_3 g66 g66.t1 TTS g66.t1 NA NA

Sequences

>g66.t1 Gene=g66 Length=240
ATGCAAATTTTTATTAAAACACTCATTGGACCATGCTTTGCAATCCCATGTGATGAAACA
GACACAATCCATACAATTAAAGAAAAAATGGAAAAGAATTACGAGGAAGGCATGCCACCA
GATCAAATGAGACTGCTATGGGGCGGCAAGCAATTGGAAGATGATAGAACACTCAAGGAC
TATGGTATCATGCACAATACCACATTGCATGTTGTTTTGCGCCTCCGAGGCGGCATCTAA

>g66.t1 Gene=g66 Length=79
MQIFIKTLIGPCFAIPCDETDTIHTIKEKMEKNYEEGMPPDQMRLLWGGKQLEDDRTLKD
YGIMHNTTLHVVLRLRGGI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g66.t1 Gene3D G3DSA:3.10.20.90 - 1 79 0.000
2 g66.t1 PANTHER PTHR10666 UBIQUITIN 1 78 0.000
3 g66.t1 PANTHER PTHR10666:SF254 UBIQUITIN-40S RIBOSOMAL PROTEIN S31 1 78 0.000
4 g66.t1 PRINTS PR00348 Ubiquitin signature 11 31 0.000
5 g66.t1 PRINTS PR00348 Ubiquitin signature 55 76 0.000
1 g66.t1 Pfam PF00240 Ubiquitin family 3 76 0.000
9 g66.t1 ProSiteProfiles PS50053 Ubiquitin domain profile. 1 78 24.007
7 g66.t1 SMART SM00213 ubq_7 1 74 0.000
6 g66.t1 SUPERFAMILY SSF54236 Ubiquitin-like 1 78 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed