Gene loci information

Transcript annotation

  • This transcript has been annotated as Fatty acyl-CoA reductase wat.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6626 g6626.t2 isoform g6626.t2 17853071 17855776
chr_2 g6626 g6626.t2 exon g6626.t2.exon1 17853071 17853172
chr_2 g6626 g6626.t2 cds g6626.t2.CDS1 17853159 17853172
chr_2 g6626 g6626.t2 exon g6626.t2.exon2 17853242 17853417
chr_2 g6626 g6626.t2 cds g6626.t2.CDS2 17853242 17853417
chr_2 g6626 g6626.t2 exon g6626.t2.exon3 17853493 17853526
chr_2 g6626 g6626.t2 cds g6626.t2.CDS3 17853493 17853526
chr_2 g6626 g6626.t2 exon g6626.t2.exon4 17853952 17854000
chr_2 g6626 g6626.t2 cds g6626.t2.CDS4 17853952 17854000
chr_2 g6626 g6626.t2 exon g6626.t2.exon5 17854131 17854321
chr_2 g6626 g6626.t2 cds g6626.t2.CDS5 17854131 17854321
chr_2 g6626 g6626.t2 exon g6626.t2.exon6 17854413 17854532
chr_2 g6626 g6626.t2 cds g6626.t2.CDS6 17854413 17854532
chr_2 g6626 g6626.t2 exon g6626.t2.exon7 17854696 17854953
chr_2 g6626 g6626.t2 cds g6626.t2.CDS7 17854696 17854953
chr_2 g6626 g6626.t2 exon g6626.t2.exon8 17855116 17855776
chr_2 g6626 g6626.t2 cds g6626.t2.CDS8 17855116 17855203
chr_2 g6626 g6626.t2 TTS g6626.t2 17855775 17855775
chr_2 g6626 g6626.t2 TSS g6626.t2 NA NA

Sequences

>g6626.t2 Gene=g6626 Length=1591
AGTAAATATTTTTTCAGTTATATTTCAATAGAAGAGTAATTTATACTCACCTTACGTTAA
TTTAAATGTTATTTTTCAATAACCTCGAATGCGAAATAACAAAATATTGGGTAAATGGCC
AAACACCTACACACTTACAAAAGCTTTGGCAGAGGATTTAGTAAAAAATGAGTGTGCGGG
ATTACCTGTAAGTGTGTTTAGACCTGCCATCATTACCTCAACTGCATCTGATCCAATAGC
GGGTTGGATTGATAATTTATATGGTCCCACTGGTGTTGTTGCTGGCGCTGGATCAGGTGT
CTTAAGAACAATGCATTGCGACAGAAATATCAATGCGAATATTGTACCCGTCGATATGAC
GGTGAATGCATTGATTGTGTCAGCATATGATGTTGCAAGAAAAAAATCTGAGAAAAATTC
GAATGAAAAGGAAGTTCATGAAATACCAGTTTATAATTATGTTTCATCCGTGCAAAATCC
ATTGAAATGGGGAGAATTTACGCAGCTCAACATGAAATATGGTTTCAATTATCCATTCAG
TAGTGCAATATGGTATATTTGCTTTTTTATGACAAAGTCTGCATTTATAAATAAGGTGTA
TACTCTATTTCTGCACATAATACCGGCTCTACTAATAGACTTTATGATTTTATGTATTGG
AAAAAAACCGAGATTGCTTAAAACTTATAAAAAAATACATAAGTTTGCAAATGTCATATC
ATTTTTTTGTACAAATGAGTGGACATTTACAAATGACAATGTGCAAAAACTTTGGCGGAA
TCTCAATAGTGAGGATAAAATACTCTATCCTTTTGATATGACACCATTGAGTTGGGAGGA
ATACATCAGTCATTATATGATTGGAATGCGGATGTATTTGTTTAAAGACGACCTTTCCAA
TGTTGAAGTTGCAAGAAAGAAATGGAGAAGACTATTTTGGCTACATCAAAGTGTGAAAGT
TCTTTTCATCACTGCTTTTAGTTATCTGATGCTAATACTCTGTAGAACAATCATTTAAAC
ACTTTGAGTAAATTTTATACTCATATACTTTTATTTTGTGCATATTAAGTATGTTTAAAA
TCGAGACATAAAACACACACACCAATTAAGTCATATTTCAAACAGAAAATTTTTTTTCTT
ATATAAAAAATTGTATTTTATATCTTTGTAAAAAAATCTCTTTATTAAGAATTTTTAAAA
AGAAACATTCTTTAAATAAGTTGTTGAGCCATTTTCTATACATATATTATATTTTGTATA
TGCACACTCTTTATTTTTAAATAATATTAAAGAAATAATTTTTTAGAAAGTTTTTTCACA
TCATCATCATCGACGTTGTCATCATCTCCTCTCGAAACGAAATAGTGTTTGCAAAATACC
TTCATAATCATTTTCAGAGCGAAAACTTGAAGACGAAATTTCAATGAAGAAAAGAGAGAG
AGAAGAAATGAAAAATAAGGAACATATTGAAAGGAAAATAAATAATAGACAGAATTTTTA
TAAAGAGATTAAAAATAGAAAAGGCTCATTTGCTAATATTTTGTAAGTTTTGGGATAGTA
TAATAAATATAGTGAAACAAATCAAACTATA

>g6626.t2 Gene=g6626 Length=309
MRNNKILGKWPNTYTLTKALAEDLVKNECAGLPVSVFRPAIITSTASDPIAGWIDNLYGP
TGVVAGAGSGVLRTMHCDRNINANIVPVDMTVNALIVSAYDVARKKSEKNSNEKEVHEIP
VYNYVSSVQNPLKWGEFTQLNMKYGFNYPFSSAIWYICFFMTKSAFINKVYTLFLHIIPA
LLIDFMILCIGKKPRLLKTYKKIHKFANVISFFCTNEWTFTNDNVQKLWRNLNSEDKILY
PFDMTPLSWEEYISHYMIGMRMYLFKDDLSNVEVARKKWRRLFWLHQSVKVLFITAFSYL
MLILCRTII

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g6626.t2 CDD cd09071 FAR_C 174 265 2.3547E-40
9 g6626.t2 Gene3D G3DSA:3.40.50.720 - 2 161 7.7E-23
3 g6626.t2 PANTHER PTHR11011:SF60 FATTY ACYL-COA REDUCTASE 2 4 302 6.5E-97
4 g6626.t2 PANTHER PTHR11011 MALE STERILITY PROTEIN 2-RELATED 4 302 6.5E-97
1 g6626.t2 Pfam PF07993 Male sterility protein 5 94 2.7E-23
2 g6626.t2 Pfam PF03015 Male sterility protein 175 267 2.2E-33
10 g6626.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 145 -
15 g6626.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 146 167 -
12 g6626.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 168 172 -
16 g6626.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 173 191 -
11 g6626.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 192 281 -
14 g6626.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 282 304 -
13 g6626.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 305 309 -
8 g6626.t2 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains 7 101 2.23E-7
6 g6626.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 145 167 -
7 g6626.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 172 191 -
5 g6626.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 282 304 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed