Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6631 g6631.t3 isoform g6631.t3 17873965 17875302
chr_2 g6631 g6631.t3 exon g6631.t3.exon1 17873965 17874102
chr_2 g6631 g6631.t3 cds g6631.t3.CDS1 17873976 17874102
chr_2 g6631 g6631.t3 TTS g6631.t3 17873978 17873978
chr_2 g6631 g6631.t3 exon g6631.t3.exon2 17874162 17874285
chr_2 g6631 g6631.t3 cds g6631.t3.CDS2 17874162 17874285
chr_2 g6631 g6631.t3 exon g6631.t3.exon3 17874353 17874502
chr_2 g6631 g6631.t3 cds g6631.t3.CDS3 17874353 17874502
chr_2 g6631 g6631.t3 exon g6631.t3.exon4 17874831 17875302
chr_2 g6631 g6631.t3 cds g6631.t3.CDS4 17874831 17874993
chr_2 g6631 g6631.t3 TSS g6631.t3 NA NA

Sequences

>g6631.t3 Gene=g6631 Length=884
AGTTAACATATAAGTACAAGACATTACGACACATGAAACTAATTTAATCATCGTGCGTAA
TCATCTTAAACGTGTGGTACATTGAGCTGGGGTTTTAAAAGCAAGTGCACAAATTCTGTC
GTAAAAGAATTATCTGAATCGAACATTGATCACCTTTCTAAGAAAGCAATCGGCACAACT
TGTAAAATTACGAGTCAACTCGAAAGTATGAGTAAAGATGAAGAATTTTTGTTCCTACTT
CTTCTTATCCCCTTGGCTTCATGAACGTGTCTCTTCTCGTGTGTGATATCAAGTTGAGAA
ACGGTAAACATGTTTCATCGCAGTGCTTTTCTTCCATCACAACTACGATCATTAACATAT
AAACAAAAAAAAGAAAGAAATCTTGTAAGATGTAGTTATACTTCTAAGCGCATATCATCA
CCAATGAGCTTTGCAATGCATCGTAGACAAAAATCTCTCACCTTAATTCTGAATCTCGAA
GCCGCTCTCGATCGCGTAGATCTCGTAGTCACTCGAGAGATCATAGATACAGTCGTTCAC
CAGCAGATCGAACAAGAGATCGCAGATCTCATTCAAGCGACCGTAGATCTGCTTCTGAAC
TTAGCGAAACACGAAAAAGTAATGACAAGTCATGGAAGAGTTCAAGGACAAATTCACCAC
AGTCAGATAGATCTCGAAGAAGTCGTTCCCAAGACACTCAAGCCTCCAATTCGGAACCGC
GTAAAGAGTGAAATGAGATTCATTCCGTTGGTAGTTACATCTTTAAGAACATCTAATAAT
TGCCGTATGACTTACGAGAAAAGTGACCTATTCATCAGTCATACATTATATAATATAAAT
TATAGTTTGAATAAATTGATTTATATTATATAAAAAAAAAATAT

>g6631.t3 Gene=g6631 Length=187
MFHRSAFLPSQLRSLTYKQKKERNLVRCSYTSKRISSPMSFAMHRRQKSLTLILNLEAAL
DRVDLVVTREIIDTVVHQQIEQEIADLIQATVDLLLNLAKHEKVMTSHGRVQGQIHHSQI
DLEEVVPKTLKPPIRNRVKSEMRFIPLVVTSLRTSNNCRMTYEKSDLFISHTLYNINYSL
NKLIYII

Protein features from InterProScan

No InterPro annotations for this transcript.

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed