General information for g6631.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6631 is located on chr_2: 17874963..17881137 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6631 | g6631.t4 | isoform | g6631.t4 | 17873965 | 17875304 |
| chr_2 | g6631 | g6631.t4 | exon | g6631.t4.exon1 | 17873965 | 17874102 |
| chr_2 | g6631 | g6631.t4 | TTS | g6631.t4 | 17873978 | 17873978 |
| chr_2 | g6631 | g6631.t4 | exon | g6631.t4.exon2 | 17874162 | 17874295 |
| chr_2 | g6631 | g6631.t4 | cds | g6631.t4.CDS1 | 17874177 | 17874295 |
| chr_2 | g6631 | g6631.t4 | exon | g6631.t4.exon3 | 17874357 | 17874506 |
| chr_2 | g6631 | g6631.t4 | cds | g6631.t4.CDS2 | 17874357 | 17874506 |
| chr_2 | g6631 | g6631.t4 | exon | g6631.t4.exon4 | 17874831 | 17875304 |
| chr_2 | g6631 | g6631.t4 | cds | g6631.t4.CDS3 | 17874831 | 17874993 |
| chr_2 | g6631 | g6631.t4 | TSS | g6631.t4 | NA | NA |
Sequences
>g6631.t4 Gene=g6631 Length=896
TCAGTTAACATATAAGTACAAGACATTACGACACATGAAACTAATTTAATCATCGTGCGT
AATCATCTTAAACGTGTGGTACATTGAGCTGGGGTTTTAAAAGCAAGTGCACAAATTCTG
TCGTAAAAGAATTATCTGAATCGAACATTGATCACCTTTCTAAGAAAGCAATCGGCACAA
CTTGTAAAATTACGAGTCAACTCGAAAGTATGAGTAAAGATGAAGAATTTTTGTTCCTAC
TTCTTCTTATCCCCTTGGCTTCATGAACGTGTCTCTTCTCGTGTGTGATATCAAGTTGAG
AAACGGTAAACATGTTTCATCGCAGTGCTTTTCTTCCATCACAACTACGATCATTAACAT
ATAAACAAAAAAAAGAAAGAAATCTTGTAAGATGTAGTTATACTTCTAAGCGCATATCAT
CACCAATGAGCTTTGCAATGCATCGTAGACAAAAATCTCTCACCTTAATTCTGAACAGAT
CTCGAAGCCGCTCTCGATCGCGTAGATCTCGTAGTCACTCGAGAGATCATAGATACAGTC
GTTCACCAGCAGATCGAACAAGAGATCGCAGATCTCATTCAAGCGACCGTAGATCTGCTT
CTGAACTTAGCGAAACACGAAAAAAAAAACATAGTGACAAGTCATGGAAGAGTTCAAGGA
CAAATTCACCACAGTCAGATAGATCTCGAAGAAGTCGTTCCCAAGACACTCAAGCCTCCA
ATTCGGAACCGCGTAAAGAGTGAAATGAGATTCATTCCGTTGGTAGTTACATCTTTAAGA
ACATCTAATAATTGCCGTATGACTTACGAGAAAAGTGACCTATTCATCAGTCATACATTA
TATAATATAAATTATAGTTTGAATAAATTGATTTATATTATATAAAAAAAAAATAT
>g6631.t4 Gene=g6631 Length=143
MFHRSAFLPSQLRSLTYKQKKERNLVRCSYTSKRISSPMSFAMHRRQKSLTLILNRSRSR
SRSRRSRSHSRDHRYSRSPADRTRDRRSHSSDRRSASELSETRKKKHSDKSWKSSRTNSP
QSDRSRRSRSQDTQASNSEPRKE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6631.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 57 | - |
| 3 | g6631.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 143 | - |
| 1 | g6631.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 72 | - |
| 4 | g6631.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 108 | - |
| 5 | g6631.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 143 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed