General information for g6635.t12
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphoglucomutase-2.
Parent gene
- The parent gene g6635 is located on chr_2: 17893964..17900832 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6635 | g6635.t12 | TTS | g6635.t12 | 17893833 | 17893833 |
| chr_2 | g6635 | g6635.t12 | isoform | g6635.t12 | 17893964 | 17894833 |
| chr_2 | g6635 | g6635.t12 | exon | g6635.t12.exon1 | 17893964 | 17894229 |
| chr_2 | g6635 | g6635.t12 | cds | g6635.t12.CDS1 | 17893980 | 17894229 |
| chr_2 | g6635 | g6635.t12 | exon | g6635.t12.exon2 | 17894287 | 17894402 |
| chr_2 | g6635 | g6635.t12 | cds | g6635.t12.CDS2 | 17894287 | 17894402 |
| chr_2 | g6635 | g6635.t12 | exon | g6635.t12.exon3 | 17894457 | 17894603 |
| chr_2 | g6635 | g6635.t12 | cds | g6635.t12.CDS3 | 17894457 | 17894603 |
| chr_2 | g6635 | g6635.t12 | exon | g6635.t12.exon4 | 17894747 | 17894833 |
| chr_2 | g6635 | g6635.t12 | cds | g6635.t12.CDS4 | 17894747 | 17894833 |
| chr_2 | g6635 | g6635.t12 | TSS | g6635.t12 | 17894902 | 17894902 |
Sequences
>g6635.t12 Gene=g6635 Length=616
ATGTCATCTTTAGAAAAAGATATTAAAATAAATTCAGGAAATGTCGAACTAGATGAGAAA
ATTCAAGAGTGGATTGATTGGGATAAGAATGAAAAGACACTTGATGAGATAAAATCTCTA
GTACTATTGGGAGATTATGAAACATTAAAAAAGCGACTTTTATGTCGTATGGCATTTGGA
ACAGCAGGCCTTCGTGGAAAAATGCAAGCAGGCTTCTCATTTATGAATGATTTGGTTATT
GTACAAACTGGACAAGGCTTAGTAACATACATCAAAAAATGTTTTCCGAATAAAGTAGAT
CAGCAGCGTGGAGTTGTTATAAGCTATGATGGACGATACAACAGTAGACGATTTGCTGAG
CTTACCGCCACAATATTCATCAATGAAAATATACCAGTTTATTTTTACAGTAAACTTACT
GCTACACCATTTGTTCCATTTGCAGTTTATCACAAAAAGGCTTTATGTGGTATTATGGTT
ACAGCATCACATAATCCTAAAGAAGACAATGGCTATAAAGTTTATTGGGAAAATTCTGCT
CAAATAATCTCACCACATGATAAAAATATACAAAACAGCATTTTGAAGAATTTAAAGTAA
TTCAATTTTAATTTTA
>g6635.t12 Gene=g6635 Length=199
MSSLEKDIKINSGNVELDEKIQEWIDWDKNEKTLDEIKSLVLLGDYETLKKRLLCRMAFG
TAGLRGKMQAGFSFMNDLVIVQTGQGLVTYIKKCFPNKVDQQRGVVISYDGRYNSRRFAE
LTATIFINENIPVYFYSKLTATPFVPFAVYHKKALCGIMVTASHNPKEDNGYKVYWENSA
QIISPHDKNIQNSILKNLK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6635.t12 | Gene3D | G3DSA:3.40.120.10 | - | 48 | 199 | 2.0E-47 |
| 2 | g6635.t12 | PANTHER | PTHR45745 | PHOSPHOMANNOMUTASE 45A | 15 | 198 | 5.4E-81 |
| 1 | g6635.t12 | Pfam | PF02878 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | 57 | 197 | 5.4E-38 |
| 4 | g6635.t12 | ProSitePatterns | PS00710 | Phosphoglucomutase and phosphomannomutase phosphoserine signature. | 157 | 166 | - |
| 3 | g6635.t12 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 45 | 196 | 5.89E-41 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000287 | magnesium ion binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0016868 | intramolecular transferase activity, phosphotransferases | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
