General information for g6635.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Glucose 1,6-bisphosphate synthase.
Parent gene
- The parent gene g6635 is located on chr_2: 17893964..17900832 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6635 | g6635.t3 | TTS | g6635.t3 | 17890390 | 17890390 |
| chr_2 | g6635 | g6635.t3 | isoform | g6635.t3 | 17890465 | 17891309 |
| chr_2 | g6635 | g6635.t3 | exon | g6635.t3.exon1 | 17890465 | 17890567 |
| chr_2 | g6635 | g6635.t3 | cds | g6635.t3.CDS1 | 17890465 | 17890567 |
| chr_2 | g6635 | g6635.t3 | exon | g6635.t3.exon2 | 17890625 | 17891309 |
| chr_2 | g6635 | g6635.t3 | cds | g6635.t3.CDS2 | 17890625 | 17891262 |
| chr_2 | g6635 | g6635.t3 | TSS | g6635.t3 | NA | NA |
Sequences
>g6635.t3 Gene=g6635 Length=788
GGTGGTCGGTCAAGTGTTTTAAAGAAGCTCATCCAAATGTAGATGATATGAAAAATTGCT
ATCTTCTTGCAAGTACTGTTAGTTCAAAGATGCTTAAATCTATGGGAAAAAAGGAAGGAT
TTAATTTTGAGGAGACATTAACCGGTTTTAAATATATGGGAAATCGAAGTGTTGAATTTA
TGGAAAAAGGAAATCAAGTACTATTTGCTTTCGAGGAAGCAATCGGATTCATGGTATCTT
CAAACGTTTTAGATAAAGACGGAGTAAGTGCTGCTGCTCATTTAGGAACTATGGCATCTT
ATATGAAACTAAAAGAAAATAAAACTTTATGTGAGACATTAGAGTATCTTTATAAAATGT
ACGGCTATCATTATTCATTAAATAGTTATTTCTTATGTTATGAACCTGAAAAAATCATAA
AAATATTTGAGCGTATAAGAAACTGGAAAGGCGAAAAAGATTCTTATCCTTCATCTATTG
GAAATTATAAAATTGATAGTATTCGTGACTTGACAGCTGGAATCGACACTTCTCAACCTA
ATAGAAAACCGTTACTTCCTTCAAGCAAAAGTTCTCAAATGATTACGTTTACATTTGAAA
ATGATACAGTTTTGACATTACGTACAAGTGGAACGGAACCAAAAATAAAATATTATTCTG
AATATTGTGCAAAACCTGATGAAAACAATTGGAAGGAGATTCAAGATAAACTGAAGGACA
TAGTTGATAAGACTGTCAATGAACTGCTTCAACCTACTGAGAATGGACTTATTCAAAAAT
CTGACTAA
>g6635.t3 Gene=g6635 Length=246
MKNCYLLASTVSSKMLKSMGKKEGFNFEETLTGFKYMGNRSVEFMEKGNQVLFAFEEAIG
FMVSSNVLDKDGVSAAAHLGTMASYMKLKENKTLCETLEYLYKMYGYHYSLNSYFLCYEP
EKIIKIFERIRNWKGEKDSYPSSIGNYKIDSIRDLTAGIDTSQPNRKPLLPSSKSSQMIT
FTFENDTVLTLRTSGTEPKIKYYSEYCAKPDENNWKEIQDKLKDIVDKTVNELLQPTENG
LIQKSD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6635.t3 | Gene3D | G3DSA:3.40.120.10 | - | 1 | 106 | 0.0e+00 |
| 7 | g6635.t3 | Gene3D | G3DSA:3.30.310.50 | Major birch pollen allergen Bet v 1 | 131 | 228 | 1.1e-05 |
| 3 | g6635.t3 | PANTHER | PTHR45745:SF2 | GLUCOSE 1,6-BISPHOSPHATE SYNTHASE | 2 | 244 | 0.0e+00 |
| 4 | g6635.t3 | PANTHER | PTHR45745 | PHOSPHOMANNOMUTASE 45A | 2 | 244 | 0.0e+00 |
| 1 | g6635.t3 | Pfam | PF02880 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III | 7 | 105 | 0.0e+00 |
| 2 | g6635.t3 | Pfam | PF00408 | Phosphoglucomutase/phosphomannomutase, C-terminal domain | 174 | 212 | 1.4e-05 |
| 6 | g6635.t3 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 6 | 108 | 0.0e+00 |
| 5 | g6635.t3 | SUPERFAMILY | SSF55957 | Phosphoglucomutase, C-terminal domain | 115 | 235 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0071704 | organic substance metabolic process | BP |
| GO:0016868 | intramolecular transferase activity, phosphotransferases | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
