Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphoglucomutase-2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6635 g6635.t7 TTS g6635.t7 17890390 17890390
chr_2 g6635 g6635.t7 isoform g6635.t7 17891005 17894833
chr_2 g6635 g6635.t7 exon g6635.t7.exon1 17891005 17891773
chr_2 g6635 g6635.t7 cds g6635.t7.CDS1 17891005 17891773
chr_2 g6635 g6635.t7 exon g6635.t7.exon2 17893984 17894229
chr_2 g6635 g6635.t7 cds g6635.t7.CDS2 17893984 17894229
chr_2 g6635 g6635.t7 exon g6635.t7.exon3 17894287 17894402
chr_2 g6635 g6635.t7 cds g6635.t7.CDS3 17894287 17894402
chr_2 g6635 g6635.t7 exon g6635.t7.exon4 17894457 17894678
chr_2 g6635 g6635.t7 cds g6635.t7.CDS4 17894457 17894522
chr_2 g6635 g6635.t7 exon g6635.t7.exon5 17894747 17894833
chr_2 g6635 g6635.t7 TSS g6635.t7 17894902 17894902

Sequences

>g6635.t7 Gene=g6635 Length=1440
ATGTCATCTTTAGAAAAAGATATTAAAATAAATTCAGGAAATGTCGAACTAGATGAGAAA
ATTCAAGAGTGGATTGATTGGGATAAGAATTGTAGAATATGGAACATTTTCATTCAAAAA
AATTATCTCTATTCATTTGATTTATAAATCATTTATTTCTAGAATGAAAAGACACTTGAT
GAGATAAAATCTCTAGTACTATTGGGAGATTATGAAACATTAAAAAAGCGACTTTTATGT
CGTATGGCATTTGGAACAGCAGGCCTTCGTGGAAAAATGCAAGCAGGCTTCTCATTTATG
AATGATTTGGTTATTGTACAAACTGGACAAGGCTTAGTAACATACATCAAAAAATGTTTT
CCGAATAAAGTAGATCAGCAGCGTGGAGTTGTTATAAGCTATGATGGACGATACAACAGT
AGACGATTTGCTGAGCTTACCGCCACAATATTCATCAATGAAAATATACCAGTTTATTTT
TACAGTAAACTTACTGCTACACCATTTGTTCCATTTGCAGTTTATCACAAAAAGGCTTTA
TGTGGTATTATGGTTACAGCATCACATAATCCTAAAGAAGACAATGGCTATAAAGTTTAT
TGGGAAAATTCTGCTCAAATAATCTCACCACATGATAAAAATATACAAAACAGCATTTTG
AAGAATTTAAATCCATTGCCATCATCTTGGAAAACTGAAGAGGCAATGAAATCATCATTA
TTGCATGATCCATATGATGAAATGTTTAAATTATACTTTGATAAACTTCAAGCAACAATC
CCTCCGAAATTTTATAAAATTAATGAAGAAGCACAACTTAAAATTGTTTATACCGCTATG
CATGGTGTTGGATATCCATTTGTTCAAAAAGCTTATGAAATTTCAAACCTTAAGCCAGTA
CATGCTGTTATTGAACAACGTGATCCAGATCCAGAATTTCCAACCGTAAAATTCCCAAAT
CCTGAAGAGGGAAAATCATGTCTAGTTTTATCAATGAAACTAGCTGATGAAGTTGGTAGT
GATCTGATAATTGCAAATGATCCAGATGCCGATCGTCTGGCTGTTGCCGAAAGAGATTCG
CGAACCAAAGAATGGAAAGTGTTTAATGGAAATGAAATTGGATCGCTTCTTGGATGGTGG
TCGGTCAAGTGTTTTAAAGAAGCTCATCCAAATGTAGATGATATGAAAAATTGCTATCTT
CTTGCAAGTACTGTTAGTTCAAAGATGCTTAAATCTATGGGAAAAAAGGAAGGATTTAAT
TTTGAGGAGACATTAACCGGTTTTAAATATATGGGAAATCGAAGTGTTGAATTTATGGAA
AAAGGAAATCAAGTACTATTTGCTTTCGAGGAAGCAATCGGATTCATGGTATCTTCAAAC
GTTTTAGATAAAGACGGAGTAAGTGCTGCTGCTCATTTAGGAACTATGGCATCTTATATG

>g6635.t7 Gene=g6635 Length=399
MAFGTAGLRGKMQAGFSFMNDLVIVQTGQGLVTYIKKCFPNKVDQQRGVVISYDGRYNSR
RFAELTATIFINENIPVYFYSKLTATPFVPFAVYHKKALCGIMVTASHNPKEDNGYKVYW
ENSAQIISPHDKNIQNSILKNLNPLPSSWKTEEAMKSSLLHDPYDEMFKLYFDKLQATIP
PKFYKINEEAQLKIVYTAMHGVGYPFVQKAYEISNLKPVHAVIEQRDPDPEFPTVKFPNP
EEGKSCLVLSMKLADEVGSDLIIANDPDADRLAVAERDSRTKEWKVFNGNEIGSLLGWWS
VKCFKEAHPNVDDMKNCYLLASTVSSKMLKSMGKKEGFNFEETLTGFKYMGNRSVEFMEK
GNQVLFAFEEAIGFMVSSNVLDKDGVSAAAHLGTMASYM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g6635.t7 CDD cd05799 PGM2 1 398 0.0
13 g6635.t7 Gene3D G3DSA:3.40.120.10 - 1 153 1.4E-46
12 g6635.t7 Gene3D G3DSA:3.40.120.10 - 168 286 1.7E-21
14 g6635.t7 Gene3D G3DSA:3.40.120.10 - 287 399 6.0E-24
4 g6635.t7 PANTHER PTHR45745 PHOSPHOMANNOMUTASE 45A 1 398 1.1E-170
7 g6635.t7 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 100 114 1.1E-8
6 g6635.t7 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 191 210 1.1E-8
5 g6635.t7 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 259 274 1.1E-8
3 g6635.t7 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 2 141 5.8E-37
2 g6635.t7 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 171 276 3.2E-24
1 g6635.t7 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 318 395 2.9E-10
11 g6635.t7 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 101 110 -
9 g6635.t7 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 2 198 5.1E-42
10 g6635.t7 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 169 278 4.71E-20
8 g6635.t7 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 267 397 4.59E-22

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0005975 carbohydrate metabolic process BP
GO:0016868 intramolecular transferase activity, phosphotransferases MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values