General information for g6635.t8
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Phosphoglucomutase-2.
Parent gene
- The parent gene g6635 is located on chr_2: 17893964..17900832 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6635 | g6635.t8 | TTS | g6635.t8 | 17890390 | 17890390 |
| chr_2 | g6635 | g6635.t8 | isoform | g6635.t8 | 17891005 | 17894833 |
| chr_2 | g6635 | g6635.t8 | exon | g6635.t8.exon1 | 17891005 | 17891773 |
| chr_2 | g6635 | g6635.t8 | cds | g6635.t8.CDS1 | 17891005 | 17891773 |
| chr_2 | g6635 | g6635.t8 | exon | g6635.t8.exon2 | 17893984 | 17894229 |
| chr_2 | g6635 | g6635.t8 | cds | g6635.t8.CDS2 | 17893984 | 17894229 |
| chr_2 | g6635 | g6635.t8 | exon | g6635.t8.exon3 | 17894287 | 17894402 |
| chr_2 | g6635 | g6635.t8 | cds | g6635.t8.CDS3 | 17894287 | 17894402 |
| chr_2 | g6635 | g6635.t8 | exon | g6635.t8.exon4 | 17894457 | 17894833 |
| chr_2 | g6635 | g6635.t8 | cds | g6635.t8.CDS4 | 17894457 | 17894522 |
| chr_2 | g6635 | g6635.t8 | TSS | g6635.t8 | 17894902 | 17894902 |
Sequences
>g6635.t8 Gene=g6635 Length=1508
ATGTCATCTTTAGAAAAAGATATTAAAATAAATTCAGGAAATGTCGAACTAGATGAGAAA
ATTCAAGAGTGGATTGATTGGGATAAGGTATGAGAATTTTTGTTAAATATTTTTTTAACA
TTTAACATGTGAAATAAAAACAAGTTTTTTTATAGAATTGTAGAATATGGAACATTTTCA
TTCAAAAAAATTATCTCTATTCATTTGATTTATAAATCATTTATTTCTAGAATGAAAAGA
CACTTGATGAGATAAAATCTCTAGTACTATTGGGAGATTATGAAACATTAAAAAAGCGAC
TTTTATGTCGTATGGCATTTGGAACAGCAGGCCTTCGTGGAAAAATGCAAGCAGGCTTCT
CATTTATGAATGATTTGGTTATTGTACAAACTGGACAAGGCTTAGTAACATACATCAAAA
AATGTTTTCCGAATAAAGTAGATCAGCAGCGTGGAGTTGTTATAAGCTATGATGGACGAT
ACAACAGTAGACGATTTGCTGAGCTTACCGCCACAATATTCATCAATGAAAATATACCAG
TTTATTTTTACAGTAAACTTACTGCTACACCATTTGTTCCATTTGCAGTTTATCACAAAA
AGGCTTTATGTGGTATTATGGTTACAGCATCACATAATCCTAAAGAAGACAATGGCTATA
AAGTTTATTGGGAAAATTCTGCTCAAATAATCTCACCACATGATAAAAATATACAAAACA
GCATTTTGAAGAATTTAAATCCATTGCCATCATCTTGGAAAACTGAAGAGGCAATGAAAT
CATCATTATTGCATGATCCATATGATGAAATGTTTAAATTATACTTTGATAAACTTCAAG
CAACAATCCCTCCGAAATTTTATAAAATTAATGAAGAAGCACAACTTAAAATTGTTTATA
CCGCTATGCATGGTGTTGGATATCCATTTGTTCAAAAAGCTTATGAAATTTCAAACCTTA
AGCCAGTACATGCTGTTATTGAACAACGTGATCCAGATCCAGAATTTCCAACCGTAAAAT
TCCCAAATCCTGAAGAGGGAAAATCATGTCTAGTTTTATCAATGAAACTAGCTGATGAAG
TTGGTAGTGATCTGATAATTGCAAATGATCCAGATGCCGATCGTCTGGCTGTTGCCGAAA
GAGATTCGCGAACCAAAGAATGGAAAGTGTTTAATGGAAATGAAATTGGATCGCTTCTTG
GATGGTGGTCGGTCAAGTGTTTTAAAGAAGCTCATCCAAATGTAGATGATATGAAAAATT
GCTATCTTCTTGCAAGTACTGTTAGTTCAAAGATGCTTAAATCTATGGGAAAAAAGGAAG
GATTTAATTTTGAGGAGACATTAACCGGTTTTAAATATATGGGAAATCGAAGTGTTGAAT
TTATGGAAAAAGGAAATCAAGTACTATTTGCTTTCGAGGAAGCAATCGGATTCATGGTAT
CTTCAAACGTTTTAGATAAAGACGGAGTAAGTGCTGCTGCTCATTTAGGAACTATGGCAT
CTTATATG
>g6635.t8 Gene=g6635 Length=399
MAFGTAGLRGKMQAGFSFMNDLVIVQTGQGLVTYIKKCFPNKVDQQRGVVISYDGRYNSR
RFAELTATIFINENIPVYFYSKLTATPFVPFAVYHKKALCGIMVTASHNPKEDNGYKVYW
ENSAQIISPHDKNIQNSILKNLNPLPSSWKTEEAMKSSLLHDPYDEMFKLYFDKLQATIP
PKFYKINEEAQLKIVYTAMHGVGYPFVQKAYEISNLKPVHAVIEQRDPDPEFPTVKFPNP
EEGKSCLVLSMKLADEVGSDLIIANDPDADRLAVAERDSRTKEWKVFNGNEIGSLLGWWS
VKCFKEAHPNVDDMKNCYLLASTVSSKMLKSMGKKEGFNFEETLTGFKYMGNRSVEFMEK
GNQVLFAFEEAIGFMVSSNVLDKDGVSAAAHLGTMASYM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 15 | g6635.t8 | CDD | cd05799 | PGM2 | 1 | 398 | 0.0 |
| 13 | g6635.t8 | Gene3D | G3DSA:3.40.120.10 | - | 1 | 153 | 1.4E-46 |
| 12 | g6635.t8 | Gene3D | G3DSA:3.40.120.10 | - | 168 | 286 | 1.7E-21 |
| 14 | g6635.t8 | Gene3D | G3DSA:3.40.120.10 | - | 287 | 399 | 6.0E-24 |
| 4 | g6635.t8 | PANTHER | PTHR45745 | PHOSPHOMANNOMUTASE 45A | 1 | 398 | 1.1E-170 |
| 7 | g6635.t8 | PRINTS | PR00509 | Phosphoglucomutase/phosphomannomutase family signature | 100 | 114 | 1.1E-8 |
| 6 | g6635.t8 | PRINTS | PR00509 | Phosphoglucomutase/phosphomannomutase family signature | 191 | 210 | 1.1E-8 |
| 5 | g6635.t8 | PRINTS | PR00509 | Phosphoglucomutase/phosphomannomutase family signature | 259 | 274 | 1.1E-8 |
| 3 | g6635.t8 | Pfam | PF02878 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I | 2 | 141 | 5.8E-37 |
| 2 | g6635.t8 | Pfam | PF02879 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II | 171 | 276 | 3.2E-24 |
| 1 | g6635.t8 | Pfam | PF02880 | Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III | 318 | 395 | 2.9E-10 |
| 11 | g6635.t8 | ProSitePatterns | PS00710 | Phosphoglucomutase and phosphomannomutase phosphoserine signature. | 101 | 110 | - |
| 9 | g6635.t8 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 2 | 198 | 5.1E-42 |
| 10 | g6635.t8 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 169 | 278 | 4.71E-20 |
| 8 | g6635.t8 | SUPERFAMILY | SSF53738 | Phosphoglucomutase, first 3 domains | 267 | 397 | 4.59E-22 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0000287 | magnesium ion binding | MF |
| GO:0005975 | carbohydrate metabolic process | BP |
| GO:0016868 | intramolecular transferase activity, phosphotransferases | MF |
KEGG
Orthology
- This transcript has been annotated with K22199 (phosphopentomutase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed