Gene loci information

Transcript annotation

  • This transcript has been annotated as Phosphoglucomutase-2.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6635 g6635.t9 TTS g6635.t9 17890390 17890390
chr_2 g6635 g6635.t9 isoform g6635.t9 17891005 17894833
chr_2 g6635 g6635.t9 exon g6635.t9.exon1 17891005 17891773
chr_2 g6635 g6635.t9 cds g6635.t9.CDS1 17891005 17891773
chr_2 g6635 g6635.t9 exon g6635.t9.exon2 17893984 17894229
chr_2 g6635 g6635.t9 cds g6635.t9.CDS2 17893984 17894229
chr_2 g6635 g6635.t9 exon g6635.t9.exon3 17894287 17894402
chr_2 g6635 g6635.t9 cds g6635.t9.CDS3 17894287 17894402
chr_2 g6635 g6635.t9 exon g6635.t9.exon4 17894457 17894603
chr_2 g6635 g6635.t9 cds g6635.t9.CDS4 17894457 17894603
chr_2 g6635 g6635.t9 exon g6635.t9.exon5 17894747 17894833
chr_2 g6635 g6635.t9 cds g6635.t9.CDS5 17894747 17894833
chr_2 g6635 g6635.t9 TSS g6635.t9 17894902 17894902

Sequences

>g6635.t9 Gene=g6635 Length=1365
ATGTCATCTTTAGAAAAAGATATTAAAATAAATTCAGGAAATGTCGAACTAGATGAGAAA
ATTCAAGAGTGGATTGATTGGGATAAGAATGAAAAGACACTTGATGAGATAAAATCTCTA
GTACTATTGGGAGATTATGAAACATTAAAAAAGCGACTTTTATGTCGTATGGCATTTGGA
ACAGCAGGCCTTCGTGGAAAAATGCAAGCAGGCTTCTCATTTATGAATGATTTGGTTATT
GTACAAACTGGACAAGGCTTAGTAACATACATCAAAAAATGTTTTCCGAATAAAGTAGAT
CAGCAGCGTGGAGTTGTTATAAGCTATGATGGACGATACAACAGTAGACGATTTGCTGAG
CTTACCGCCACAATATTCATCAATGAAAATATACCAGTTTATTTTTACAGTAAACTTACT
GCTACACCATTTGTTCCATTTGCAGTTTATCACAAAAAGGCTTTATGTGGTATTATGGTT
ACAGCATCACATAATCCTAAAGAAGACAATGGCTATAAAGTTTATTGGGAAAATTCTGCT
CAAATAATCTCACCACATGATAAAAATATACAAAACAGCATTTTGAAGAATTTAAATCCA
TTGCCATCATCTTGGAAAACTGAAGAGGCAATGAAATCATCATTATTGCATGATCCATAT
GATGAAATGTTTAAATTATACTTTGATAAACTTCAAGCAACAATCCCTCCGAAATTTTAT
AAAATTAATGAAGAAGCACAACTTAAAATTGTTTATACCGCTATGCATGGTGTTGGATAT
CCATTTGTTCAAAAAGCTTATGAAATTTCAAACCTTAAGCCAGTACATGCTGTTATTGAA
CAACGTGATCCAGATCCAGAATTTCCAACCGTAAAATTCCCAAATCCTGAAGAGGGAAAA
TCATGTCTAGTTTTATCAATGAAACTAGCTGATGAAGTTGGTAGTGATCTGATAATTGCA
AATGATCCAGATGCCGATCGTCTGGCTGTTGCCGAAAGAGATTCGCGAACCAAAGAATGG
AAAGTGTTTAATGGAAATGAAATTGGATCGCTTCTTGGATGGTGGTCGGTCAAGTGTTTT
AAAGAAGCTCATCCAAATGTAGATGATATGAAAAATTGCTATCTTCTTGCAAGTACTGTT
AGTTCAAAGATGCTTAAATCTATGGGAAAAAAGGAAGGATTTAATTTTGAGGAGACATTA
ACCGGTTTTAAATATATGGGAAATCGAAGTGTTGAATTTATGGAAAAAGGAAATCAAGTA
CTATTTGCTTTCGAGGAAGCAATCGGATTCATGGTATCTTCAAACGTTTTAGATAAAGAC
GGAGTAAGTGCTGCTGCTCATTTAGGAACTATGGCATCTTATATG

>g6635.t9 Gene=g6635 Length=455
MSSLEKDIKINSGNVELDEKIQEWIDWDKNEKTLDEIKSLVLLGDYETLKKRLLCRMAFG
TAGLRGKMQAGFSFMNDLVIVQTGQGLVTYIKKCFPNKVDQQRGVVISYDGRYNSRRFAE
LTATIFINENIPVYFYSKLTATPFVPFAVYHKKALCGIMVTASHNPKEDNGYKVYWENSA
QIISPHDKNIQNSILKNLNPLPSSWKTEEAMKSSLLHDPYDEMFKLYFDKLQATIPPKFY
KINEEAQLKIVYTAMHGVGYPFVQKAYEISNLKPVHAVIEQRDPDPEFPTVKFPNPEEGK
SCLVLSMKLADEVGSDLIIANDPDADRLAVAERDSRTKEWKVFNGNEIGSLLGWWSVKCF
KEAHPNVDDMKNCYLLASTVSSKMLKSMGKKEGFNFEETLTGFKYMGNRSVEFMEKGNQV
LFAFEEAIGFMVSSNVLDKDGVSAAAHLGTMASYM

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g6635.t9 CDD cd05799 PGM2 56 454 0.0
13 g6635.t9 Gene3D G3DSA:3.40.120.10 - 48 209 3.7E-47
12 g6635.t9 Gene3D G3DSA:3.40.120.10 - 224 342 2.2E-21
14 g6635.t9 Gene3D G3DSA:3.40.120.10 - 343 455 7.7E-24
4 g6635.t9 PANTHER PTHR45745 PHOSPHOMANNOMUTASE 45A 15 454 8.9E-185
7 g6635.t9 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 156 170 1.6E-8
5 g6635.t9 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 247 266 1.6E-8
6 g6635.t9 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 315 330 1.6E-8
3 g6635.t9 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 57 197 4.0E-37
2 g6635.t9 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 227 332 4.1E-24
1 g6635.t9 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 374 451 3.6E-10
11 g6635.t9 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 157 166 -
8 g6635.t9 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 45 254 1.37E-43
10 g6635.t9 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 225 334 5.89E-20
9 g6635.t9 SUPERFAMILY SSF53738 Phosphoglucomutase, first 3 domains 323 453 5.89E-22

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0000287 magnesium ion binding MF
GO:0005975 carbohydrate metabolic process BP
GO:0016868 intramolecular transferase activity, phosphotransferases MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values