General information for g664.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g664 is located on chr_3: 5054088..5056781 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g664 | g664.t2 | TSS | g664.t2 | 5053469 | 5053469 |
| chr_3 | g664 | g664.t2 | isoform | g664.t2 | 5053523 | 5054647 |
| chr_3 | g664 | g664.t2 | exon | g664.t2.exon1 | 5053523 | 5054322 |
| chr_3 | g664 | g664.t2 | cds | g664.t2.CDS1 | 5054088 | 5054322 |
| chr_3 | g664 | g664.t2 | exon | g664.t2.exon2 | 5054464 | 5054647 |
| chr_3 | g664 | g664.t2 | cds | g664.t2.CDS2 | 5054464 | 5054645 |
| chr_3 | g664 | g664.t2 | TTS | g664.t2 | NA | NA |
Sequences
>g664.t2 Gene=g664 Length=984
TTATGTGTGGAATCGAAACAAATTATAAATGAAAGCGAAATCGTAAAATACACGCTTTTA
TTTTATTGTAGAATTCAGTTTTTTCAATTGCAAAATTTAAAATTTTTTTATAAATTTCAG
AATGTCACAAAATAAAATGACAAAAATGTTGTTCCATTTCACCTTAAAATAATAATTTTC
TAAATTTTAATTTCTGTTCTTATAGATACTTTTATAGTAAGCATTGTTGCATAAAAATTT
CTTAGCATTATAAAAGAAGTCAACGATAAATTGAAAAAAATTAATGTCAACAATTTTAAA
ACTTTAAGGTCAATAATCAAACAATAGCGTGCGAAAACAGTCATAAAAAAAAGTCGGCTT
CTCTCACATATACATATAGAACGAACAGAATTTCATAATTTTCTTTCGCGGTAAGTAAGT
TTTTTAAAAATTGTTATTTCTTGCAAAATTAATTTAAATTAATACAATAATTTTACACAA
ACTCTTAATTTTTATATTAATATTCATTATTAGTTGGAGAATTGAAAAATCAAATCGAAT
TTAAAAGAAAATAAACATTAATAAAATGGCGAGTAATAATCGAAACTGGATGCCGAAAGT
CGATGAAATTTATACTGGTGAAGTGATTGATGTAAATAAACATGGAGTTGTTGTTCAATT
GAAAGGCTTTGGTAGTAGACGAGGACGTAAAGATCTCACAGGCATTCTTCATAAGACAGA
TTCACCGATCGTTAACAATTTGATTGAAGGGAATAAAGTAAAAGTTCGTGTAATTTCGTG
TTCATCTGATGGCTTCATTTCTTCTGCAATTGGTATTGAAGTTATAACAACCGAGCCAAA
TTTTTTGAAGAATATTGATTATCGTATGTCTTCAAAAATTCCAACAAATATTCCCATTTT
TAAGAATGAATACAGTACTATGGCACTGGTTGCAAAGCAAAAGAACAAAAATATTCAACC
AGGTCAAGTTTCTTTTCAACAGTC
>g664.t2 Gene=g664 Length=139
MASNNRNWMPKVDEIYTGEVIDVNKHGVVVQLKGFGSRRGRKDLTGILHKTDSPIVNNLI
EGNKVKVRVISCSSDGFISSAIGIEVITTEPNFLKNIDYRMSSKIPTNIPIFKNEYSTMA
LVAKQKNKNIQPGQVSFQQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g664.t2 | Gene3D | G3DSA:2.40.50.140 | - | 11 | 82 | 0.0000015 |
| 4 | g664.t2 | ProSiteProfiles | PS50126 | S1 domain profile. | 13 | 87 | 9.3340000 |
| 2 | g664.t2 | SMART | SM00316 | S1_6 | 11 | 89 | 0.0032000 |
| 1 | g664.t2 | SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 9 | 76 | 0.0000004 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0003676 | nucleic acid binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed