General information for g6653.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6653 is located on chr_2: 17951237..17953125 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6653 | g6653.t2 | isoform | g6653.t2 | 17951237 | 17952258 |
| chr_2 | g6653 | g6653.t2 | exon | g6653.t2.exon1 | 17951237 | 17951330 |
| chr_2 | g6653 | g6653.t2 | cds | g6653.t2.CDS1 | 17951237 | 17951330 |
| chr_2 | g6653 | g6653.t2 | exon | g6653.t2.exon2 | 17951391 | 17951557 |
| chr_2 | g6653 | g6653.t2 | cds | g6653.t2.CDS2 | 17951391 | 17951557 |
| chr_2 | g6653 | g6653.t2 | exon | g6653.t2.exon3 | 17951620 | 17951843 |
| chr_2 | g6653 | g6653.t2 | cds | g6653.t2.CDS3 | 17951620 | 17951843 |
| chr_2 | g6653 | g6653.t2 | exon | g6653.t2.exon4 | 17951907 | 17952258 |
| chr_2 | g6653 | g6653.t2 | cds | g6653.t2.CDS4 | 17951907 | 17952258 |
| chr_2 | g6653 | g6653.t2 | TSS | g6653.t2 | NA | NA |
| chr_2 | g6653 | g6653.t2 | TTS | g6653.t2 | NA | NA |
Sequences
>g6653.t2 Gene=g6653 Length=837
ATGAAATTTTTATTAAATTTCATAATAATATTGTGTATTTTACTTGCACTACCTGTAAAT
TGTCATCGAATTTTGGGCCTATTTCCACACCCAGGACATTCACATTTTCAATTTTTTCAT
CCTATTATGAAAGCACTTGCTGAGAGAGGTCATGAGGTGACGGTTGTAAGTGAATTTCCT
AATAAGGAACCACTTGAGAATTACCACGATGAAATTTTAACAAATCAAGGAACTGGATTA
TTAAACTTTGTTTCTCTTGATAATTTCAAAACACAGTCAGTTTTTCAACATTTTTTTGAG
TTTTTTATGCTTCGTGAATGGGGAAAGGAAGCATGCGCTAAGGCATTAAACTCGTCTGCT
ATTAAAAATGTTCTTAACAAAGGTCGTCGTGAACCGTTTGATTTGATAATTGTTGAATTG
TTTAATACTGATTGTATGATGGGAGTCGCTCACAAATTGAAAGCGCCAGTGATTGGATTG
AGCAGTTGTAACATTTTACCTTGGCATTTCACACAACTTGGATTGCCCTATGAAACCAAT
TTCTATCCAGTTACATTTTTAGGAGCTTCTGATAAAATGTCATATACACAGCGCATTTCT
AATTGGTTTGCTTTTGTTTACATGAATATCATGTACAAAATTTTTAGTCAAAATGATGCT
AATAAATTACTGCGTCAACGGTTCGGTGATGATTTTCCAGATGTTTCTGATCTTACGAAA
AAAGTGTCAATGATGTTTGTTAATCAACATTATTCACTTAGTGGAGCAAAACATATTTCA
CCAAACATAATTGAACTTGGCGGCATTCACATTGAGAAACCAAATTCAATCGATTCG
>g6653.t2 Gene=g6653 Length=279
MKFLLNFIIILCILLALPVNCHRILGLFPHPGHSHFQFFHPIMKALAERGHEVTVVSEFP
NKEPLENYHDEILTNQGTGLLNFVSLDNFKTQSVFQHFFEFFMLREWGKEACAKALNSSA
IKNVLNKGRREPFDLIIVELFNTDCMMGVAHKLKAPVIGLSSCNILPWHFTQLGLPYETN
FYPVTFLGASDKMSYTQRISNWFAFVYMNIMYKIFSQNDANKLLRQRFGDDFPDVSDLTK
KVSMMFVNQHYSLSGAKHISPNIIELGGIHIEKPNSIDS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g6653.t2 | Gene3D | G3DSA:3.40.50.2000 | Glycogen Phosphorylase B; | 24 | 232 | 5.3E-13 |
| 2 | g6653.t2 | PANTHER | PTHR48043 | EG:EG0003.4 PROTEIN-RELATED | 13 | 274 | 1.9E-95 |
| 3 | g6653.t2 | PANTHER | PTHR48043:SF114 | DOROTHY, ISOFORM A-RELATED | 13 | 274 | 1.9E-95 |
| 1 | g6653.t2 | Pfam | PF00201 | UDP-glucoronosyl and UDP-glucosyl transferase | 34 | 273 | 7.4E-11 |
| 9 | g6653.t2 | Phobius | SIGNAL_PEPTIDE | Signal peptide region | 1 | 21 | - |
| 10 | g6653.t2 | Phobius | SIGNAL_PEPTIDE_N_REGION | N-terminal region of a signal peptide. | 1 | 6 | - |
| 11 | g6653.t2 | Phobius | SIGNAL_PEPTIDE_H_REGION | Hydrophobic region of a signal peptide. | 7 | 17 | - |
| 12 | g6653.t2 | Phobius | SIGNAL_PEPTIDE_C_REGION | C-terminal region of a signal peptide. | 18 | 21 | - |
| 8 | g6653.t2 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 22 | 279 | - |
| 5 | g6653.t2 | SUPERFAMILY | SSF53756 | UDP-Glycosyltransferase/glycogen phosphorylase | 22 | 276 | 2.01E-40 |
| 6 | g6653.t2 | SignalP_EUK | SignalP-noTM | SignalP-noTM | 1 | 21 | - |
| 4 | g6653.t2 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 7 | 29 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0008194 | UDP-glycosyltransferase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed