General information for g6682.t64
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6682 is located on chr_2: 18063212..18071363 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6682 | g6682.t64 | isoform | g6682.t64 | 18062926 | 18063728 |
| chr_2 | g6682 | g6682.t64 | exon | g6682.t64.exon1 | 18062926 | 18063728 |
| chr_2 | g6682 | g6682.t64 | cds | g6682.t64.CDS1 | 18063212 | 18063634 |
| chr_2 | g6682 | g6682.t64 | TSS | g6682.t64 | 18064447 | 18064447 |
| chr_2 | g6682 | g6682.t64 | TTS | g6682.t64 | NA | NA |
Sequences
>g6682.t64 Gene=g6682 Length=803
GCTTCAAACATCAGCACGTTATGGATATGAACGTTTGCTCATTCAACTTTATGAAAAATT
GAATGAGAAAATTTTTGTAGCAAATAAGAAAGTGATGGAGCAATATTTAATGATATCTGA
AATATCCAAATGCATTACGACAAGCAAAAGCTATTCAAGATTACATTTAAATACAGGATC
TGAAGAAAATCATGATGTTGAAAAACATAGAGAAAACTATTTGAAAATTCATCTCTCTGC
AATGTTCTGGACTAATTGGAATGAATCACTGCCTTTTATATATAAAGTAGAAAAGAACAA
TTTTAGAGTATGCTATGCTACTCATTGTAGTTTATCAGAAATTAAAGATATTTTATATTA
TTTGAAACCATTGTCAATTTATCCAACAGTCCTACCAGAAAAATCTAACGAACGAACAAA
AATGTTTACATTAATTGATGAAATCATCAACTCATATAATGATAAGAAAACTGAAACAAA
AGAAAGATTTTCATTTAAAAGGCTTAAAACATCTTAAAAGATTGTAATATCTTAGTATTC
GATAATTCTAATATTTAATCCTTTTTACAATGAAAATGTCAGTATTTTATATGATTTGGA
AATATTACTATACTTTTGACGACTTTGGAAAATAGGATCTAACTATGACACAAATAATGA
AACAAATATTTTGTCTTCACATTAATTTTGATAAAAATAAAAGTGAAAACTATCAATATC
AAGAATTCCTCTTTCCCTCATTCATAAAAATGTTACTTTGGAAAATTTACGATATATGAA
TAAGGTACAAACACCATATATTT
>g6682.t64 Gene=g6682 Length=140
MEQYLMISEISKCITTSKSYSRLHLNTGSEENHDVEKHRENYLKIHLSAMFWTNWNESLP
FIYKVEKNNFRVCYATHCSLSEIKDILYYLKPLSIYPTVLPEKSNERTKMFTLIDEIINS
YNDKKTETKERFSFKRLKTS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g6682.t64 | Pfam | PF07522 | DNA repair metallo-beta-lactamase | 66 | 102 | 5e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
