General information for g6682.t66
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Protein artemis.
Parent gene
- The parent gene g6682 is located on chr_2: 18063212..18071363 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6682 | g6682.t66 | TTS | g6682.t66 | 18063009 | 18063009 |
| chr_2 | g6682 | g6682.t66 | isoform | g6682.t66 | 18063212 | 18065118 |
| chr_2 | g6682 | g6682.t66 | exon | g6682.t66.exon1 | 18063212 | 18063732 |
| chr_2 | g6682 | g6682.t66 | cds | g6682.t66.CDS1 | 18063212 | 18063732 |
| chr_2 | g6682 | g6682.t66 | exon | g6682.t66.exon2 | 18063792 | 18064313 |
| chr_2 | g6682 | g6682.t66 | cds | g6682.t66.CDS2 | 18063792 | 18064179 |
| chr_2 | g6682 | g6682.t66 | exon | g6682.t66.exon3 | 18064756 | 18064807 |
| chr_2 | g6682 | g6682.t66 | exon | g6682.t66.exon4 | 18064954 | 18065118 |
| chr_2 | g6682 | g6682.t66 | TSS | g6682.t66 | NA | NA |
Sequences
>g6682.t66 Gene=g6682 Length=1260
TTTTAATTTTTTCTATTACAAGATGTTGTTTAATAAAGGTTTTACACTTATAAAAGTTTT
TGCTTCTTTTTTACAAAAATAATTTATAAAAAAAAATTTCTGTGCAAAGAGAAACTTCAG
TACATTTTCTAATTTCTTCTTTGTTGCTTATCGAGCTTCAAATAGGTAACGTCTTTCTAC
ATCTATTGCCAACCTGTTACTGAAGTATATAAAAATGGAATTGCGGTGGATAATTTTACG
AATGATTCTGTAAAATGTTTTTTTCTTTCGCATTGTCATACTGATCATCTGATTGGAATA
AAGGATCTATCAAATTCAGAACTTCCTATCTATACAACAGAATTATCAGCAATGATTTTG
AAAACTCAATACCCTGATTTAAATGTCAAGTCTATTGAAATAGGAGTACCAACAAATTTT
GAATTAGAAATTGATTCTAAACATGAAACAAAGTTTATTGTTACTCTGATTAATGGAGGT
CATTGTATAGGATCTTGTATGTTTTTATTTCAAACGGAGGAGCATGACATTCTATATACT
GGAGATTTTCGTTTTACATTAAAAGATGTAGAAAATATACAGATACTTAAAGATGCTAAA
ATATATGGGAAATTAAAAATTTACTTAGATACGACGTTTATGAAAAATGAATACAAAAAT
TTTCCTCGACAAAAAGATAGCTGTCAAAAAGTTGTTGAAATTGTACAAAATCATTTGGGC
CAATCACAAATGAATAAAGTCATGCTTCAAACATCAGCACGTTATGGATATGAACGTTTG
CTCATTCAACTTTATGAAAAATTGAATGAGAAAATTTTTGTAGCAAATAAGAAAGTGATG
GAGCAATATTTAATGATATCTGAAATATCCAAATGCATTACGACAAGCAAAAGCTATTCA
AGATTACATTTAAATACAGGATCTGAAGAAAATCATGATGTTGAAAAACATAGAGAAAAC
TATTTGAAAATTCATCTCTCTGCAATGTTCTGGACTAATTGGAATGAATCACTGCCTTTT
ATATATAAAGTAGAAAAGAACAATTTTAGAGTATGCTATGCTACTCATTGTAGTTTATCA
GAAATTAAAGATATTTTATATTATTTGAAACCATTGTCAATTTATCCAACAGTCCTACCA
GAAAAATCTAACGAACGAACAAAAATGTTTACATTAATTGATGAAATCATCAACTCATAT
AATGATAAGAAAACTGAAACAAAAGAAAGATTTTCATTTAAAAGGCTTAAAACATCTTAA
>g6682.t66 Gene=g6682 Length=302
MILKTQYPDLNVKSIEIGVPTNFELEIDSKHETKFIVTLINGGHCIGSCMFLFQTEEHDI
LYTGDFRFTLKDVENIQILKDAKIYGKLKIYLDTTFMKNEYKNFPRQKDSCQKVVEIVQN
HLGQSQMNKVMLQTSARYGYERLLIQLYEKLNEKIFVANKKVMEQYLMISEISKCITTSK
SYSRLHLNTGSEENHDVEKHRENYLKIHLSAMFWTNWNESLPFIYKVEKNNFRVCYATHC
SLSEIKDILYYLKPLSIYPTVLPEKSNERTKMFTLIDEIINSYNDKKTETKERFSFKRLK
TS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6682.t66 | Gene3D | G3DSA:3.60.15.10 | - | 1 | 135 | 0.0e+00 |
| 2 | g6682.t66 | PANTHER | PTHR23240 | DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED | 12 | 278 | 0.0e+00 |
| 3 | g6682.t66 | PANTHER | PTHR23240:SF8 | PROTEIN ARTEMIS | 12 | 278 | 0.0e+00 |
| 1 | g6682.t66 | Pfam | PF07522 | DNA repair metallo-beta-lactamase | 229 | 264 | 2.2e-06 |
| 4 | g6682.t66 | SUPERFAMILY | SSF56281 | Metallo-hydrolase/oxidoreductase | 34 | 263 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
