Gene loci information

Transcript annotation

  • This transcript has been annotated as Guanine nucleotide-binding protein subunit alpha-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6684 g6684.t1 TTS g6684.t1 18071593 18071593
chr_2 g6684 g6684.t1 isoform g6684.t1 18072312 18073939
chr_2 g6684 g6684.t1 exon g6684.t1.exon1 18072312 18072690
chr_2 g6684 g6684.t1 cds g6684.t1.CDS1 18072312 18072690
chr_2 g6684 g6684.t1 exon g6684.t1.exon2 18072746 18072885
chr_2 g6684 g6684.t1 cds g6684.t1.CDS2 18072746 18072885
chr_2 g6684 g6684.t1 exon g6684.t1.exon3 18072951 18073082
chr_2 g6684 g6684.t1 cds g6684.t1.CDS3 18072951 18073082
chr_2 g6684 g6684.t1 exon g6684.t1.exon4 18073146 18073357
chr_2 g6684 g6684.t1 cds g6684.t1.CDS4 18073146 18073357
chr_2 g6684 g6684.t1 exon g6684.t1.exon5 18073430 18073568
chr_2 g6684 g6684.t1 cds g6684.t1.CDS5 18073430 18073568
chr_2 g6684 g6684.t1 exon g6684.t1.exon6 18073784 18073939
chr_2 g6684 g6684.t1 cds g6684.t1.CDS6 18073784 18073939
chr_2 g6684 g6684.t1 TSS g6684.t1 18074178 18074178

Sequences

>g6684.t1 Gene=g6684 Length=1158
ATGTCTCGGCGCAGAAATGTACGAAGAAATTGCTGTGAAGGAGTGTTTTCACATTTATTA
AGGCTTAGATTCACTCCTGAAGAGCTTGAGCAACGCGATAAGTCGCGGAAAATTGATAAA
TTCCTGGAGAAAGACAAAAATTCATTTAGAAGACAGGTGAAACTTCTACTTTTGGGCGCT
GGCGAGTCTGGAAAGTCAACTTTTTTGAAACAAATGCGTATCATTCACGGTATTAAATTC
GAGCCCGAACTTATACGAGAATATCATCATGTTATTTATCAGAACATTGTTAAAGGCATG
CAAGTGTTAGTAGATGCACGAGAAAAACTTGACATACCTTGGGAGCATCCAATATCGTCA
AATCAAGCAGCTAATCAAGCCATATTATTTCATAGCAGTAATGAATTAGATGTAGATACA
TTTCGTGAATATGCACCATATATAAATCGACTATGGCAAGATAGAGCCATTAAGAAAGCT
TTTGATCGCAGGAGAGAATTTCAATTGAGCGATTCTGTAAGTTATTTTTTTGACGAATTG
GATCGAGTATCACGCAATGACTACGTTCCATCACATAAAGATATTCTTCATTGTCGTAAA
GCGACGAAAGGAGTCTTTGAGTTTACGATAAGAATACAAAACATTCCATTTGTTTTTGTT
GATGTTGGTGGTCAGCGTACGCAACGACAAAAGTGGACAAAGTGTTTTGATGGCTCTGTG
ACATCAATTTTATTTTTGGTATCGACTTCCGAATTTGATCAAGTGCTTGCTGAGGATAGG
AAAACAAATCGTCTAGAAGAATCAAAAAATATATTTGATACAATAGTTAACAATACAGCA
TTTCAAGGAATCTCAATTATCCTCTTCCTAAATAAAACGGATTTACTTTCGTTGAAAGTA
AAAAATCCTGAGACTGATATACGTTGGTATTATCCCCAATTTACTGGTAATCCACATTCA
ATTATCGACGTACAGACTTTCATTCTTCAAATGTTTCTTCGCGTTCGAAAGAATAATCAT
AATCACAGCCTAAAACCGCCACAACCAATTTATCATCACTTTACAAATGCCGTTGATACA
CAAAACATACAGGTTGTGTTTAACTCAGTGAAAGATACAATTTTACAAAGAAATTTAGCA
AGCCTAATGTTGCAATAA

>g6684.t1 Gene=g6684 Length=385
MSRRRNVRRNCCEGVFSHLLRLRFTPEELEQRDKSRKIDKFLEKDKNSFRRQVKLLLLGA
GESGKSTFLKQMRIIHGIKFEPELIREYHHVIYQNIVKGMQVLVDAREKLDIPWEHPISS
NQAANQAILFHSSNELDVDTFREYAPYINRLWQDRAIKKAFDRRREFQLSDSVSYFFDEL
DRVSRNDYVPSHKDILHCRKATKGVFEFTIRIQNIPFVFVDVGGQRTQRQKWTKCFDGSV
TSILFLVSTSEFDQVLAEDRKTNRLEESKNIFDTIVNNTAFQGISIILFLNKTDLLSLKV
KNPETDIRWYYPQFTGNPHSIIDVQTFILQMFLRVRKNNHNHSLKPPQPIYHHFTNAVDT
QNIQVVFNSVKDTILQRNLASLMLQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g6684.t1 CDD cd00066 G-alpha 53 379 0.000
16 g6684.t1 Gene3D G3DSA:3.40.50.300 - 37 376 0.000
17 g6684.t1 Gene3D G3DSA:1.10.400.10 GI Alpha 1 81 201 0.000
2 g6684.t1 PANTHER PTHR10218:SF205 GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT ALPHA HOMOLOG 23 385 0.000
3 g6684.t1 PANTHER PTHR10218 GTP-BINDING PROTEIN ALPHA SUBUNIT 23 385 0.000
13 g6684.t1 PRINTS PR00318 Alpha G protein (transducin) signature 54 69 0.000
5 g6684.t1 PRINTS PR00440 G protein alpha subunit group 12 signature 88 100 0.000
6 g6684.t1 PRINTS PR00440 G protein alpha subunit group 12 signature 101 110 0.000
10 g6684.t1 PRINTS PR00318 Alpha G protein (transducin) signature 188 210 0.000
9 g6684.t1 PRINTS PR00318 Alpha G protein (transducin) signature 217 234 0.000
12 g6684.t1 PRINTS PR00318 Alpha G protein (transducin) signature 240 268 0.000
11 g6684.t1 PRINTS PR00318 Alpha G protein (transducin) signature 286 295 0.000
8 g6684.t1 PRINTS PR00440 G protein alpha subunit group 12 signature 307 319 0.000
7 g6684.t1 PRINTS PR00440 G protein alpha subunit group 12 signature 330 340 0.000
4 g6684.t1 PRINTS PR00440 G protein alpha subunit group 12 signature 366 376 0.000
1 g6684.t1 Pfam PF00503 G-protein alpha subunit 34 374 0.000
20 g6684.t1 ProSiteProfiles PS51882 G-alpha domain profile. 51 385 84.031
19 g6684.t1 SMART SM00275 galpha_1 32 384 0.000
14 g6684.t1 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 51 380 0.000
15 g6684.t1 SUPERFAMILY SSF47895 Transducin (alpha subunit), insertion domain 80 202 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031683 G-protein beta/gamma-subunit complex binding MF
GO:0007186 G protein-coupled receptor signaling pathway BP
GO:0007266 Rho protein signal transduction BP
GO:0007165 signal transduction BP
GO:0001664 G protein-coupled receptor binding MF
GO:0019001 guanyl nucleotide binding MF
GO:0003924 GTPase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values