General information for g6684.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6684 is located on chr_2: 18072746..18073939 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6684 | g6684.t3 | isoform | g6684.t3 | 18071363 | 18072885 |
| chr_2 | g6684 | g6684.t3 | exon | g6684.t3.exon1 | 18071363 | 18072690 |
| chr_2 | g6684 | g6684.t3 | cds | g6684.t3.CDS1 | 18072312 | 18072479 |
| chr_2 | g6684 | g6684.t3 | exon | g6684.t3.exon2 | 18072746 | 18072885 |
| chr_2 | g6684 | g6684.t3 | TSS | g6684.t3 | NA | NA |
| chr_2 | g6684 | g6684.t3 | TTS | g6684.t3 | NA | NA |
Sequences
>g6684.t3 Gene=g6684 Length=1468
AACATTCCATTTGTTTTTGTTGATGTTGGTGGTCAGCGTACGCAACGACAAAAGTGGACA
AAGTGTTTTGATGGCTCTGTGACATCAATTTTATTTTTGGTATCGACTTCCGAATTTGAT
CAAGTGCTTGCTGAGGATAGGAAAACAAATCGTCTAGAAGAATCAAAAAATATATTTGAT
ACAATAGTTAACAATACAGCATTTCAAGGAATCTCAATTATCCTCTTCCTAAATAAAACG
GATTTACTTTCGTTGAAAGTAAAAAATCCTGAGACTGATATACGTTGGTATTATCCCCAA
TTTACTGGTAATCCACATTCAATTATCGACGTACAGACTTTCATTCTTCAAATGTTTCTT
CGCGTTCGAAAGAATAATCATAATCACAGCCTAAAACCGCCACAACCAATTTATCATCAC
TTTACAAATGCCGTTGATACACAAAACATACAGGTTGTGTTTAACTCAGTGAAAGATACA
ATTTTACAAAGAAATTTAGCAAGCCTAATGTTGCAATAAAAATTTGCTTATATACAATTT
TTTAATGCAACTAATTAATAATTACAGAAATACACTGTAAATAGTTATATCCAGTATTTT
CTCAATTTTTGTCTATTTCTATTTATTAATTAAAATAAATTGACACTACAGTAGTATGTA
TAGGGACTTTTTTGAAAATCTATTAAAAAAAATATATAAACACGCACACCCTTTAAACTA
TAATTTGCTAAATTACGATGATCAGTTATAAATTAAATTTTTCCAATCGTTTCTATATTA
TGAAGTCAACGTTTCAAATGATCAAAAATTTAAAGATCTTTATATTATCATTGTCCTTTT
ATGTAAATATGAAATACTTATTACAATATATTGTGAAGGGTGAAAATTCTCTTTCAAACT
GTTTTTTTATAGAATCATTTAAAACCAAAAAAATTAAATACCTACCTACAATTCAAAGAT
CTTACATTTTGATTTTGGAGAGTTGGATTCTCAGATACTGAAAAATAACAAGACTAAACT
TTACATAACATTTGATGAAATAAATTTTTGGTGCCTTTTAAAACAACAGAAAGACTAAAA
TTTTTTGGAAAAAAAATACTTTGTAAAAAAGAGTTAAAAATATCAACCAAGCTAAGAATC
AGCATTTAAATAAAATAATAACATATAATGTAAAATACAATACAATGTGTATCAATTGTA
ATAATGAATAAATTAATTTGTATCATATATAAAACTTTAAAAAAAATTTTTATTATGTAC
CTATGTACAAAATATTTTTTAGTGTCTTAGATACATAAGAGTAAAATTTATTTGATCAGA
TGTTTGCTTTAACAAAAACATACCCTCTCAAACTTACCTTATAGCATATTTTTATTTATT
GAATCGAAGCATTAGTTGAATCGGTAAGTATATAACAATTTGAATAAAAATATCTTTTAT
TCATTTTTCACAATTACAATTTTATTAA
>g6684.t3 Gene=g6684 Length=55
MFLRVRKNNHNHSLKPPQPIYHHFTNAVDTQNIQVVFNSVKDTILQRNLASLMLQ
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6684.t3 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 54 | 0.0e+00 |
| 1 | g6684.t3 | PANTHER | PTHR10218:SF205 | GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT ALPHA HOMOLOG | 15 | 55 | 0.0e+00 |
| 2 | g6684.t3 | PANTHER | PTHR10218 | GTP-BINDING PROTEIN ALPHA SUBUNIT | 15 | 55 | 0.0e+00 |
| 4 | g6684.t3 | PRINTS | PR00440 | G protein alpha subunit group 12 signature | 18 | 28 | 9.1e-05 |
| 3 | g6684.t3 | PRINTS | PR00440 | G protein alpha subunit group 12 signature | 45 | 55 | 9.1e-05 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0031683 | G-protein beta/gamma-subunit complex binding | MF |
| GO:0007186 | G protein-coupled receptor signaling pathway | BP |
| GO:0007266 | Rho protein signal transduction | BP |
| GO:0001664 | G protein-coupled receptor binding | MF |
| GO:0019001 | guanyl nucleotide binding | MF |
| GO:0003924 | GTPase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
