Gene loci information

Transcript annotation

  • This transcript has been annotated as Guanine nucleotide-binding protein subunit alpha-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6684 g6684.t4 isoform g6684.t4 18071363 18073939
chr_2 g6684 g6684.t4 exon g6684.t4.exon1 18071363 18072690
chr_2 g6684 g6684.t4 cds g6684.t4.CDS1 18072312 18072690
chr_2 g6684 g6684.t4 exon g6684.t4.exon2 18072746 18072885
chr_2 g6684 g6684.t4 cds g6684.t4.CDS2 18072746 18072885
chr_2 g6684 g6684.t4 exon g6684.t4.exon3 18072951 18073082
chr_2 g6684 g6684.t4 cds g6684.t4.CDS3 18072951 18073082
chr_2 g6684 g6684.t4 exon g6684.t4.exon4 18073146 18073357
chr_2 g6684 g6684.t4 cds g6684.t4.CDS4 18073146 18073357
chr_2 g6684 g6684.t4 exon g6684.t4.exon5 18073430 18073939
chr_2 g6684 g6684.t4 cds g6684.t4.CDS5 18073430 18073511
chr_2 g6684 g6684.t4 TSS g6684.t4 18074178 18074178
chr_2 g6684 g6684.t4 TTS g6684.t4 NA NA

Sequences

>g6684.t4 Gene=g6684 Length=2322
ATGTCTCGGCGCAGAAATGTACGAAGAAATTGCTGTGAAGGAGTGTTTTCACATTTATTA
AGGCTTAGATTCACTCCTGAAGAGCTTGAGCAACGCGATAAGTCGCGGAAAATTGATAAA
TTCCTGGAGAAAGACAAAAATTCATTTAGAAGACAGGTAAACTTTCCCATTTTTTGTTGT
ATTTCCTTCATTCTACATACACATATATTTCTCTCACTTTCAATAGTCGCATGATTTTTC
CTTGATTCTGATTCATCATTTTTTATTATATTTTCTTTTCATATTTATCGTTACAAGAAA
GAGTCAATTGTTTATTGTTTACACATATTTGTACTTATTAAAAAAATACTATTGTGCCAT
TTTTTTCATAGGTGAAACTTCTACTTTTGGGCGCTGGCGAGTCTGGAAAGTCAACTTTTT
TGAAACAAATGCGTATCATTCACGGTATTAAATTCGAGCCCGAACTTATACGAGAATATC
ATCATGTTATTTATCAGAACATTGTTAAAGGCATGCAAGTGTTAGTAGATGCACGAGAAA
AACTTGACATACCTTGGGAGCATCCAATATCGTCAAATCAAGCAGCTAATCAAGCCATAT
TATTTCATAGCAGTAATGAATTAGATGTAGATACATTTCGTGAATATGCACCATATATAA
ATCGACTATGGCAAGATAGAGCCATTAAGAAAGCTTTTGATCGCAGGAGAGAATTTCAAT
TGAGCGATTCTGTAAGTTATTTTTTTGACGAATTGGATCGAGTATCACGCAATGACTACG
TTCCATCACATAAAGATATTCTTCATTGTCGTAAAGCGACGAAAGGAGTCTTTGAGTTTA
CGATAAGAATACAAAACATTCCATTTGTTTTTGTTGATGTTGGTGGTCAGCGTACGCAAC
GACAAAAGTGGACAAAGTGTTTTGATGGCTCTGTGACATCAATTTTATTTTTGGTATCGA
CTTCCGAATTTGATCAAGTGCTTGCTGAGGATAGGAAAACAAATCGTCTAGAAGAATCAA
AAAATATATTTGATACAATAGTTAACAATACAGCATTTCAAGGAATCTCAATTATCCTCT
TCCTAAATAAAACGGATTTACTTTCGTTGAAAGTAAAAAATCCTGAGACTGATATACGTT
GGTATTATCCCCAATTTACTGGTAATCCACATTCAATTATCGACGTACAGACTTTCATTC
TTCAAATGTTTCTTCGCGTTCGAAAGAATAATCATAATCACAGCCTAAAACCGCCACAAC
CAATTTATCATCACTTTACAAATGCCGTTGATACACAAAACATACAGGTTGTGTTTAACT
CAGTGAAAGATACAATTTTACAAAGAAATTTAGCAAGCCTAATGTTGCAATAAAAATTTG
CTTATATACAATTTTTTAATGCAACTAATTAATAATTACAGAAATACACTGTAAATAGTT
ATATCCAGTATTTTCTCAATTTTTGTCTATTTCTATTTATTAATTAAAATAAATTGACAC
TACAGTAGTATGTATAGGGACTTTTTTGAAAATCTATTAAAAAAAATATATAAACACGCA
CACCCTTTAAACTATAATTTGCTAAATTACGATGATCAGTTATAAATTAAATTTTTCCAA
TCGTTTCTATATTATGAAGTCAACGTTTCAAATGATCAAAAATTTAAAGATCTTTATATT
ATCATTGTCCTTTTATGTAAATATGAAATACTTATTACAATATATTGTGAAGGGTGAAAA
TTCTCTTTCAAACTGTTTTTTTATAGAATCATTTAAAACCAAAAAAATTAAATACCTACC
TACAATTCAAAGATCTTACATTTTGATTTTGGAGAGTTGGATTCTCAGATACTGAAAAAT
AACAAGACTAAACTTTACATAACATTTGATGAAATAAATTTTTGGTGCCTTTTAAAACAA
CAGAAAGACTAAAATTTTTTGGAAAAAAAATACTTTGTAAAAAAGAGTTAAAAATATCAA
CCAAGCTAAGAATCAGCATTTAAATAAAATAATAACATATAATGTAAAATACAATACAAT
GTGTATCAATTGTAATAATGAATAAATTAATTTGTATCATATATAAAACTTTAAAAAAAA
TTTTTATTATGTACCTATGTACAAAATATTTTTTAGTGTCTTAGATACATAAGAGTAAAA
TTTATTTGATCAGATGTTTGCTTTAACAAAAACATACCCTCTCAAACTTACCTTATAGCA
TATTTTTATTTATTGAATCGAAGCATTAGTTGAATCGGTAAGTATATAACAATTTGAATA
AAAATATCTTTTATTCATTTTTCACAATTACAATTTTATTAA

>g6684.t4 Gene=g6684 Length=314
MRIIHGIKFEPELIREYHHVIYQNIVKGMQVLVDAREKLDIPWEHPISSNQAANQAILFH
SSNELDVDTFREYAPYINRLWQDRAIKKAFDRRREFQLSDSVSYFFDELDRVSRNDYVPS
HKDILHCRKATKGVFEFTIRIQNIPFVFVDVGGQRTQRQKWTKCFDGSVTSILFLVSTSE
FDQVLAEDRKTNRLEESKNIFDTIVNNTAFQGISIILFLNKTDLLSLKVKNPETDIRWYY
PQFTGNPHSIIDVQTFILQMFLRVRKNNHNHSLKPPQPIYHHFTNAVDTQNIQVVFNSVK
DTILQRNLASLMLQ

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g6684.t4 CDD cd00066 G-alpha 1 308 0.000
15 g6684.t4 Gene3D G3DSA:3.40.50.300 - 1 305 0.000
16 g6684.t4 Gene3D G3DSA:1.10.400.10 GI Alpha 1 10 130 0.000
2 g6684.t4 PANTHER PTHR10218:SF205 GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT ALPHA HOMOLOG 1 314 0.000
3 g6684.t4 PANTHER PTHR10218 GTP-BINDING PROTEIN ALPHA SUBUNIT 1 314 0.000
6 g6684.t4 PRINTS PR00440 G protein alpha subunit group 12 signature 17 29 0.000
7 g6684.t4 PRINTS PR00440 G protein alpha subunit group 12 signature 30 39 0.000
9 g6684.t4 PRINTS PR00318 Alpha G protein (transducin) signature 117 139 0.000
10 g6684.t4 PRINTS PR00318 Alpha G protein (transducin) signature 146 163 0.000
12 g6684.t4 PRINTS PR00318 Alpha G protein (transducin) signature 169 197 0.000
11 g6684.t4 PRINTS PR00318 Alpha G protein (transducin) signature 215 224 0.000
8 g6684.t4 PRINTS PR00440 G protein alpha subunit group 12 signature 236 248 0.000
5 g6684.t4 PRINTS PR00440 G protein alpha subunit group 12 signature 259 269 0.000
4 g6684.t4 PRINTS PR00440 G protein alpha subunit group 12 signature 295 305 0.000
1 g6684.t4 Pfam PF00503 G-protein alpha subunit 1 303 0.000
19 g6684.t4 ProSiteProfiles PS51882 G-alpha domain profile. 1 314 73.753
18 g6684.t4 SMART SM00275 galpha_1 1 313 0.000
14 g6684.t4 SUPERFAMILY SSF47895 Transducin (alpha subunit), insertion domain 9 131 0.000
13 g6684.t4 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 124 309 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031683 G-protein beta/gamma-subunit complex binding MF
GO:0007186 G protein-coupled receptor signaling pathway BP
GO:0007266 Rho protein signal transduction BP
GO:0007165 signal transduction BP
GO:0001664 G protein-coupled receptor binding MF
GO:0019001 guanyl nucleotide binding MF
GO:0003924 GTPase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values