Gene loci information

Transcript annotation

  • This transcript has been annotated as Guanine nucleotide-binding protein subunit alpha-like protein.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6684 g6684.t5 TTS g6684.t5 18071764 18071764
chr_2 g6684 g6684.t5 isoform g6684.t5 18072746 18073939
chr_2 g6684 g6684.t5 exon g6684.t5.exon1 18072746 18072885
chr_2 g6684 g6684.t5 cds g6684.t5.CDS1 18072748 18072885
chr_2 g6684 g6684.t5 exon g6684.t5.exon2 18072951 18073082
chr_2 g6684 g6684.t5 cds g6684.t5.CDS2 18072951 18073082
chr_2 g6684 g6684.t5 exon g6684.t5.exon3 18073146 18073357
chr_2 g6684 g6684.t5 cds g6684.t5.CDS3 18073146 18073357
chr_2 g6684 g6684.t5 exon g6684.t5.exon4 18073430 18073568
chr_2 g6684 g6684.t5 cds g6684.t5.CDS4 18073430 18073568
chr_2 g6684 g6684.t5 exon g6684.t5.exon5 18073784 18073939
chr_2 g6684 g6684.t5 cds g6684.t5.CDS5 18073784 18073939
chr_2 g6684 g6684.t5 TSS g6684.t5 18074178 18074178

Sequences

>g6684.t5 Gene=g6684 Length=779
ATGTCTCGGCGCAGAAATGTACGAAGAAATTGCTGTGAAGGAGTGTTTTCACATTTATTA
AGGCTTAGATTCACTCCTGAAGAGCTTGAGCAACGCGATAAGTCGCGGAAAATTGATAAA
TTCCTGGAGAAAGACAAAAATTCATTTAGAAGACAGGTGAAACTTCTACTTTTGGGCGCT
GGCGAGTCTGGAAAGTCAACTTTTTTGAAACAAATGCGTATCATTCACGGTATTAAATTC
GAGCCCGAACTTATACGAGAATATCATCATGTTATTTATCAGAACATTGTTAAAGGCATG
CAAGTGTTAGTAGATGCACGAGAAAAACTTGACATACCTTGGGAGCATCCAATATCGTCA
AATCAAGCAGCTAATCAAGCCATATTATTTCATAGCAGTAATGAATTAGATGTAGATACA
TTTCGTGAATATGCACCATATATAAATCGACTATGGCAAGATAGAGCCATTAAGAAAGCT
TTTGATCGCAGGAGAGAATTTCAATTGAGCGATTCTGTAAGTTATTTTTTTGACGAATTG
GATCGAGTATCACGCAATGACTACGTTCCATCACATAAAGATATTCTTCATTGTCGTAAA
GCGACGAAAGGAGTCTTTGAGTTTACGATAAGAATACAAAACATTCCATTTGTTTTTGTT
GATGTTGGTGGTCAGCGTACGCAACGACAAAAGTGGACAAAGTGTTTTGATGGCTCTGTG
ACATCAATTTTATTTTTGGTATCGACTTCCGAATTTGATCAAGTGCTTGCTGAGGATAG

>g6684.t5 Gene=g6684 Length=259
MSRRRNVRRNCCEGVFSHLLRLRFTPEELEQRDKSRKIDKFLEKDKNSFRRQVKLLLLGA
GESGKSTFLKQMRIIHGIKFEPELIREYHHVIYQNIVKGMQVLVDAREKLDIPWEHPISS
NQAANQAILFHSSNELDVDTFREYAPYINRLWQDRAIKKAFDRRREFQLSDSVSYFFDEL
DRVSRNDYVPSHKDILHCRKATKGVFEFTIRIQNIPFVFVDVGGQRTQRQKWTKCFDGSV
TSILFLVSTSEFDQVLAED

Protein features from InterProScan

Transcript Database ID Name Start End E.value
13 g6684.t5 CDD cd00066 G-alpha 53 259 0.000000
12 g6684.t5 Gene3D G3DSA:1.10.400.10 GI Alpha 1 82 196 0.000000
2 g6684.t5 PANTHER PTHR10218:SF205 GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT ALPHA HOMOLOG 23 259 0.000000
3 g6684.t5 PANTHER PTHR10218 GTP-BINDING PROTEIN ALPHA SUBUNIT 23 259 0.000000
9 g6684.t5 PRINTS PR00318 Alpha G protein (transducin) signature 54 69 0.000000
4 g6684.t5 PRINTS PR00440 G protein alpha subunit group 12 signature 88 100 0.000074
5 g6684.t5 PRINTS PR00440 G protein alpha subunit group 12 signature 101 110 0.000074
7 g6684.t5 PRINTS PR00318 Alpha G protein (transducin) signature 188 210 0.000000
6 g6684.t5 PRINTS PR00318 Alpha G protein (transducin) signature 217 234 0.000000
8 g6684.t5 PRINTS PR00318 Alpha G protein (transducin) signature 240 259 0.000000
1 g6684.t5 Pfam PF00503 G-protein alpha subunit 34 259 0.000000
15 g6684.t5 ProSiteProfiles PS51882 G-alpha domain profile. 51 259 55.861000
14 g6684.t5 SMART SM00275 galpha_1 32 259 0.000000
10 g6684.t5 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 31 257 0.000000
11 g6684.t5 SUPERFAMILY SSF47895 Transducin (alpha subunit), insertion domain 80 202 0.000000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0031683 G-protein beta/gamma-subunit complex binding MF
GO:0007186 G protein-coupled receptor signaling pathway BP
GO:0007266 Rho protein signal transduction BP
GO:0007165 signal transduction BP
GO:0001664 G protein-coupled receptor binding MF
GO:0019001 guanyl nucleotide binding MF
GO:0003924 GTPase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values