General information for g6705.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase.
Parent gene
- The parent gene g6705 is located on chr_2: 18135213..18137626 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6705 | g6705.t1 | TSS | g6705.t1 | 18135153 | 18135153 |
| chr_2 | g6705 | g6705.t1 | isoform | g6705.t1 | 18135213 | 18137626 |
| chr_2 | g6705 | g6705.t1 | exon | g6705.t1.exon1 | 18135213 | 18136284 |
| chr_2 | g6705 | g6705.t1 | cds | g6705.t1.CDS1 | 18135213 | 18136284 |
| chr_2 | g6705 | g6705.t1 | exon | g6705.t1.exon2 | 18136824 | 18137626 |
| chr_2 | g6705 | g6705.t1 | cds | g6705.t1.CDS2 | 18136824 | 18137626 |
| chr_2 | g6705 | g6705.t1 | TTS | g6705.t1 | 18137759 | 18137759 |
Sequences
>g6705.t1 Gene=g6705 Length=1875
ATGTCTATAAATTCCGATTTAATTAAAAAATTAGATAATAAAACAAAAGATGTGTTCATT
AGTAGTGTTACAATTTGCCTAAAGCTGTTAGAAAACATCATAAATAATCCGAGAGAAGAA
AAATATAGGAAATTCAAAAAATCAAATCCCAAAATTTCAAAAGAACTTCTTACTCTCGAT
GGAATGGAAGAGTTCTTACTCAGTTTAGGTTTTGAATTAACTGAAAATGAAGAGTTTATA
CTTAGAAGAGGTGGCATGGGTGTAATATCAAAACTAAAGAATTATCGCGATGCACTTCAG
AATCAATTGGAACTTATCAGAAACCCACCAACAAATGATGAAATAAAATTGAACGATGAT
AAGAGAGAAATTTCAATAATGACGTGTGATATAAAAGCTCTTAAACCTTTTCATGAGAGA
ATTTCTTTTCCAAGCATTATAACAAGCTCTAATCAATTTTTGAGACAATTGGAACAACTT
TCTGATTCAGTGATGCAATATGATGATGTTCAACTTCAAAAGTCTGCATTAAATTTAATA
CCAACTGAAAAATTAAAAATGAAAGCAATTGAGAATCTGCGAAAATTTCAGAAATTGATT
AAAGAAAAAGAAATTTTAGATGATGAGCCTCCATTGGATGATTTTTTTCTTGAAGAATTG
GCAGCATGGTTTAAGAATGAATTTTTTACTTGGGTCAATAATATGCCATGTCGAATATGT
AAAGAAGAAGATACAAAAGCTTGTGGAATGATAATGAGGAGTAGTGTAAGAGTTGAGCAA
TATATGTGCACTCGATGCAAAGTGATTACTGAATTTCCGCGATATAATGATATAGAAAAA
TTATTAATTACCAGAATGGGTAGATGTGGTGAATCTGCTAATTTATTCACATTTATCTGC
AGATGTTTTAAATATGATGCCCGCTATATATTTTGCACTGGCGATCATGTGTGGACAGAA
GTTTATTACTATTCAAAAAAGAGATTTGTTCATGTTGATCCTTCTGAAAATATTTTTGAT
TCACCATACATGTATGAAAAAGGATGGCATAAAAAACTCGATTATGTTTTAGCATTTAGT
TGCGACGATGTTCAAGATGTGTCATGGAGATATTCTAATGAACATGAAGAAATGAAAAAA
CGAAGAAAAAATTGTACAGAGAATGAATTAATGTCAACTATTTTAGAACTAAGACGCAAA
AGACAATCAAATTTATCAAACGCTCGTAAAAAATTCTTATCATTGAGAACGATGGCAGAG
CTGTCTGAAATGATGACTACACGTGAACCAACAATCAATGAATTGAAAGGACGTTCTTCA
GGTAGTTTAGCATGGCGCTTGGAAAGAGGAGAAATCAATACATCATCCAATAAATTTGTT
TTTGAAATAAAAGCAGTGGAGGAAAATGCAAAAAAATTTAACTTACGATATTCAAGTGCT
AAAGATTGCTACGAAAGATTCGTTAATCCTCATGATATTGAAAAGATAAATGTTTGGAAA
ACATGTGTATATCAATTTGAAAATATTTTTCGTAAAATTGAACATGATCATAAAATGACA
TATTTGTCAAGAACTGAAGAGTCTGAAAATGGAATGATTGAATGGAAATTTAATTTTAAA
AATGCTCAAATTAAATCAATTGATTTGAAATTTGATACAAAAACGTTTGAGTCAGGATGT
ATAAGACTGAATTATGTTGATCCTAATGGCAAATTTTTAGAAACAAAAGATGATCTAATA
GGATTGAATGGATTTGGTATTGTTGCGAATTTATCTGGTGGTAATGGTGATTGCGCTTGG
CAACATTCGCAACTTTTTAGAGAAAAGTTAAACAGTAATATTTTTTCTTTTTCTTTATCG
ATAGAATTTATTTAA
>g6705.t1 Gene=g6705 Length=624
MSINSDLIKKLDNKTKDVFISSVTICLKLLENIINNPREEKYRKFKKSNPKISKELLTLD
GMEEFLLSLGFELTENEEFILRRGGMGVISKLKNYRDALQNQLELIRNPPTNDEIKLNDD
KREISIMTCDIKALKPFHERISFPSIITSSNQFLRQLEQLSDSVMQYDDVQLQKSALNLI
PTEKLKMKAIENLRKFQKLIKEKEILDDEPPLDDFFLEELAAWFKNEFFTWVNNMPCRIC
KEEDTKACGMIMRSSVRVEQYMCTRCKVITEFPRYNDIEKLLITRMGRCGESANLFTFIC
RCFKYDARYIFCTGDHVWTEVYYYSKKRFVHVDPSENIFDSPYMYEKGWHKKLDYVLAFS
CDDVQDVSWRYSNEHEEMKKRRKNCTENELMSTILELRRKRQSNLSNARKKFLSLRTMAE
LSEMMTTREPTINELKGRSSGSLAWRLERGEINTSSNKFVFEIKAVEENAKKFNLRYSSA
KDCYERFVNPHDIEKINVWKTCVYQFENIFRKIEHDHKMTYLSRTEESENGMIEWKFNFK
NAQIKSIDLKFDTKTFESGCIRLNYVDPNGKFLETKDDLIGLNGFGIVANLSGGNGDCAW
QHSQLFREKLNSNIFSFSLSIEFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 16 | g6705.t1 | CDD | cd09212 | PUB | 13 | 100 | 0.000 |
| 12 | g6705.t1 | Gene3D | G3DSA:1.20.58.2190 | - | 3 | 102 | 0.000 |
| 13 | g6705.t1 | Gene3D | G3DSA:3.10.620.30 | - | 163 | 414 | 0.000 |
| 14 | g6705.t1 | Gene3D | G3DSA:2.20.25.10 | - | 234 | 276 | 0.000 |
| 11 | g6705.t1 | Gene3D | G3DSA:2.60.120.1020 | - | 454 | 624 | 0.000 |
| 4 | g6705.t1 | PANTHER | PTHR12143:SF19 | PEPTIDE-N(4)-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE | 6 | 613 | 0.000 |
| 5 | g6705.t1 | PANTHER | PTHR12143 | PEPTIDE N-GLYCANASE PNGASE -RELATED | 6 | 613 | 0.000 |
| 1 | g6705.t1 | Pfam | PF09409 | PUB domain | 17 | 82 | 0.000 |
| 2 | g6705.t1 | Pfam | PF01841 | Transglutaminase-like superfamily | 257 | 334 | 0.000 |
| 3 | g6705.t1 | Pfam | PF04721 | PNGase C-terminal domain, mannose-binding module PAW | 437 | 622 | 0.000 |
| 15 | g6705.t1 | ProSiteProfiles | PS51398 | PAW domain profile. | 434 | 624 | 21.224 |
| 9 | g6705.t1 | SMART | SM00580 | PGNneu | 21 | 83 | 0.000 |
| 10 | g6705.t1 | SMART | SM00460 | TG_5 | 281 | 336 | 0.000 |
| 8 | g6705.t1 | SUPERFAMILY | SSF143503 | PUG domain-like | 7 | 108 | 0.000 |
| 7 | g6705.t1 | SUPERFAMILY | SSF54001 | Cysteine proteinases | 153 | 425 | 0.000 |
| 6 | g6705.t1 | SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 467 | 622 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0006516 | glycoprotein catabolic process | BP |
| GO:0005737 | cytoplasm | CC |
KEGG
Orthology
- This transcript has been annotated with K01456 (peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
