General information for g6705.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase.
Parent gene
- The parent gene g6705 is located on chr_2: 18135213..18137626 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6705 | g6705.t2 | TSS | g6705.t2 | 18135153 | 18135153 |
| chr_2 | g6705 | g6705.t2 | isoform | g6705.t2 | 18135213 | 18137626 |
| chr_2 | g6705 | g6705.t2 | exon | g6705.t2.exon1 | 18135213 | 18137626 |
| chr_2 | g6705 | g6705.t2 | cds | g6705.t2.CDS1 | 18135213 | 18136292 |
| chr_2 | g6705 | g6705.t2 | TTS | g6705.t2 | 18137759 | 18137759 |
Sequences
>g6705.t2 Gene=g6705 Length=2414
ATGTCTATAAATTCCGATTTAATTAAAAAATTAGATAATAAAACAAAAGATGTGTTCATT
AGTAGTGTTACAATTTGCCTAAAGCTGTTAGAAAACATCATAAATAATCCGAGAGAAGAA
AAATATAGGAAATTCAAAAAATCAAATCCCAAAATTTCAAAAGAACTTCTTACTCTCGAT
GGAATGGAAGAGTTCTTACTCAGTTTAGGTTTTGAATTAACTGAAAATGAAGAGTTTATA
CTTAGAAGAGGTGGCATGGGTGTAATATCAAAACTAAAGAATTATCGCGATGCACTTCAG
AATCAATTGGAACTTATCAGAAACCCACCAACAAATGATGAAATAAAATTGAACGATGAT
AAGAGAGAAATTTCAATAATGACGTGTGATATAAAAGCTCTTAAACCTTTTCATGAGAGA
ATTTCTTTTCCAAGCATTATAACAAGCTCTAATCAATTTTTGAGACAATTGGAACAACTT
TCTGATTCAGTGATGCAATATGATGATGTTCAACTTCAAAAGTCTGCATTAAATTTAATA
CCAACTGAAAAATTAAAAATGAAAGCAATTGAGAATCTGCGAAAATTTCAGAAATTGATT
AAAGAAAAAGAAATTTTAGATGATGAGCCTCCATTGGATGATTTTTTTCTTGAAGAATTG
GCAGCATGGTTTAAGAATGAATTTTTTACTTGGGTCAATAATATGCCATGTCGAATATGT
AAAGAAGAAGATACAAAAGCTTGTGGAATGATAATGAGGAGTAGTGTAAGAGTTGAGCAA
TATATGTGCACTCGATGCAAAGTGATTACTGAATTTCCGCGATATAATGATATAGAAAAA
TTATTAATTACCAGAATGGGTAGATGTGGTGAATCTGCTAATTTATTCACATTTATCTGC
AGATGTTTTAAATATGATGCCCGCTATATATTTTGCACTGGCGATCATGTGTGGACAGAA
GTTTATTACTATTCAAAAAAGAGATTTGTTCATGTTGATCCTTCTGAAAATATTTTTGAT
TCACCATACATGTATGAAAAAGGATGGCATAAAAAACTCGATTATGTTTTAGGTTTGTAA
TATAAACTTCTACTTATATAGCATATTTCTATTAGTATCCATAAAAGTCGATGCATCTGT
CATTCTAACTAATCTTGATTGTATTACCAATCTTTTTATAAAATTCTACATTAATATGTT
GTTGCTGACTATAAAAAATGTAGAGGTTTATCAAAATTTATTACACCACGATATCTTTTA
CCAAGCATCTACCACAAAATTCACCAAAATATTTCTACCACAAAATTTTGACTATAATAT
TCTCACCTCTTTCTACCATAATATTCTCACCTCTTTCTACCATAATATTCTCACCTTTTT
CTCTATAATTTTTTCACCACTTTTTACCATAAATTTTCACCACTTTTTACCACAAAATTT
TCACCAAACTTTTTCAACCACAGTTTTTCAAGTTTTCACCATACCTTTTTCTATATAAAA
AATTTTTAAATGTATTTCTGTTAAGTTTTGCTACAACATACTGAATCGTCAGAAAAAAAT
GCTAAATTATTAATACAGATTGTTTTTGATATGGTTTTTTTATAATAACAGCATTTAGTT
GCGACGATGTTCAAGATGTGTCATGGAGATATTCTAATGAACATGAAGAAATGAAAAAAC
GAAGAAAAAATTGTACAGAGAATGAATTAATGTCAACTATTTTAGAACTAAGACGCAAAA
GACAATCAAATTTATCAAACGCTCGTAAAAAATTCTTATCATTGAGAACGATGGCAGAGC
TGTCTGAAATGATGACTACACGTGAACCAACAATCAATGAATTGAAAGGACGTTCTTCAG
GTAGTTTAGCATGGCGCTTGGAAAGAGGAGAAATCAATACATCATCCAATAAATTTGTTT
TTGAAATAAAAGCAGTGGAGGAAAATGCAAAAAAATTTAACTTACGATATTCAAGTGCTA
AAGATTGCTACGAAAGATTCGTTAATCCTCATGATATTGAAAAGATAAATGTTTGGAAAA
CATGTGTATATCAATTTGAAAATATTTTTCGTAAAATTGAACATGATCATAAAATGACAT
ATTTGTCAAGAACTGAAGAGTCTGAAAATGGAATGATTGAATGGAAATTTAATTTTAAAA
ATGCTCAAATTAAATCAATTGATTTGAAATTTGATACAAAAACGTTTGAGTCAGGATGTA
TAAGACTGAATTATGTTGATCCTAATGGCAAATTTTTAGAAACAAAAGATGATCTAATAG
GATTGAATGGATTTGGTATTGTTGCGAATTTATCTGGTGGTAATGGTGATTGCGCTTGGC
AACATTCGCAACTTTTTAGAGAAAAGTTAAACAGTAATATTTTTTCTTTTTCTTTATCGA
TAGAATTTATTTAA
>g6705.t2 Gene=g6705 Length=359
MSINSDLIKKLDNKTKDVFISSVTICLKLLENIINNPREEKYRKFKKSNPKISKELLTLD
GMEEFLLSLGFELTENEEFILRRGGMGVISKLKNYRDALQNQLELIRNPPTNDEIKLNDD
KREISIMTCDIKALKPFHERISFPSIITSSNQFLRQLEQLSDSVMQYDDVQLQKSALNLI
PTEKLKMKAIENLRKFQKLIKEKEILDDEPPLDDFFLEELAAWFKNEFFTWVNNMPCRIC
KEEDTKACGMIMRSSVRVEQYMCTRCKVITEFPRYNDIEKLLITRMGRCGESANLFTFIC
RCFKYDARYIFCTGDHVWTEVYYYSKKRFVHVDPSENIFDSPYMYEKGWHKKLDYVLGL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 12 | g6705.t2 | CDD | cd09212 | PUB | 13 | 100 | 0 |
| 9 | g6705.t2 | Gene3D | G3DSA:1.20.58.2190 | - | 3 | 102 | 0 |
| 10 | g6705.t2 | Gene3D | G3DSA:3.10.620.30 | - | 149 | 265 | 0 |
| 11 | g6705.t2 | Gene3D | G3DSA:3.10.620.30 | - | 266 | 359 | 0 |
| 3 | g6705.t2 | PANTHER | PTHR12143:SF19 | PEPTIDE-N(4)-(N-ACETYL-BETA-GLUCOSAMINYL)ASPARAGINE AMIDASE | 6 | 357 | 0 |
| 4 | g6705.t2 | PANTHER | PTHR12143 | PEPTIDE N-GLYCANASE PNGASE -RELATED | 6 | 357 | 0 |
| 1 | g6705.t2 | Pfam | PF09409 | PUB domain | 17 | 82 | 0 |
| 2 | g6705.t2 | Pfam | PF01841 | Transglutaminase-like superfamily | 257 | 334 | 0 |
| 7 | g6705.t2 | SMART | SM00580 | PGNneu | 21 | 83 | 0 |
| 8 | g6705.t2 | SMART | SM00460 | TG_5 | 281 | 336 | 0 |
| 6 | g6705.t2 | SUPERFAMILY | SSF143503 | PUG domain-like | 7 | 108 | 0 |
| 5 | g6705.t2 | SUPERFAMILY | SSF54001 | Cysteine proteinases | 153 | 358 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
