General information for g6706.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Zinc finger protein 235.
Parent gene
- The parent gene g6706 is located on chr_2: 18138200..18140964 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6706 | g6706.t1 | isoform | g6706.t1 | 18138200 | 18140653 |
| chr_2 | g6706 | g6706.t1 | exon | g6706.t1.exon1 | 18138200 | 18138317 |
| chr_2 | g6706 | g6706.t1 | cds | g6706.t1.CDS1 | 18138200 | 18138317 |
| chr_2 | g6706 | g6706.t1 | exon | g6706.t1.exon2 | 18138377 | 18138425 |
| chr_2 | g6706 | g6706.t1 | cds | g6706.t1.CDS2 | 18138377 | 18138425 |
| chr_2 | g6706 | g6706.t1 | exon | g6706.t1.exon3 | 18138481 | 18138514 |
| chr_2 | g6706 | g6706.t1 | cds | g6706.t1.CDS3 | 18138481 | 18138514 |
| chr_2 | g6706 | g6706.t1 | exon | g6706.t1.exon4 | 18138578 | 18138627 |
| chr_2 | g6706 | g6706.t1 | cds | g6706.t1.CDS4 | 18138578 | 18138627 |
| chr_2 | g6706 | g6706.t1 | exon | g6706.t1.exon5 | 18138689 | 18138917 |
| chr_2 | g6706 | g6706.t1 | cds | g6706.t1.CDS5 | 18138689 | 18138917 |
| chr_2 | g6706 | g6706.t1 | exon | g6706.t1.exon6 | 18138969 | 18139227 |
| chr_2 | g6706 | g6706.t1 | cds | g6706.t1.CDS6 | 18138969 | 18139227 |
| chr_2 | g6706 | g6706.t1 | exon | g6706.t1.exon7 | 18139299 | 18139314 |
| chr_2 | g6706 | g6706.t1 | cds | g6706.t1.CDS7 | 18139299 | 18139314 |
| chr_2 | g6706 | g6706.t1 | exon | g6706.t1.exon8 | 18139378 | 18139438 |
| chr_2 | g6706 | g6706.t1 | cds | g6706.t1.CDS8 | 18139378 | 18139438 |
| chr_2 | g6706 | g6706.t1 | exon | g6706.t1.exon9 | 18139507 | 18139529 |
| chr_2 | g6706 | g6706.t1 | cds | g6706.t1.CDS9 | 18139507 | 18139529 |
| chr_2 | g6706 | g6706.t1 | exon | g6706.t1.exon10 | 18139591 | 18139659 |
| chr_2 | g6706 | g6706.t1 | cds | g6706.t1.CDS10 | 18139591 | 18139659 |
| chr_2 | g6706 | g6706.t1 | exon | g6706.t1.exon11 | 18139720 | 18140653 |
| chr_2 | g6706 | g6706.t1 | cds | g6706.t1.CDS11 | 18139720 | 18140653 |
| chr_2 | g6706 | g6706.t1 | TSS | g6706.t1 | 18140961 | 18140961 |
| chr_2 | g6706 | g6706.t1 | TTS | g6706.t1 | NA | NA |
Sequences
>g6706.t1 Gene=g6706 Length=1842
ATGCTTGCAAACAATTCTCAGCAAAAGCAAATAATTCTTCCAGTCTATCCAGCAGTAATT
ATATCAGGACAAAAACTCAATACGTCCGCATCTGCAGCAACAGTGATTGGTATTGAACAA
TCTCAGAATCAAAAATGTCACATTTGTCAAAAAGATTTTCCATCGATGATTGCCTTTCAA
AATCACGTGAAAGAGCAGCATCTGGATGGAAAAGTTTATCGAAATATAATTGCTGTTTCG
ACAGTCAATAGTCCAGTAACAATGATACCCGCACAAGTTGCAAATGTTCAGCAGCAACAA
TACCAAATTGCGACAACAAATACACCAGTTAAATTGGAAAAGGATTATAATCATTCTAAA
AGTCACACTATACTACACACGTCTGATGTTCTTAAACAAACCTATCAAACGACACCGGCT
AATTTTTCACAAGTTAGTGTCAACGTAACGCCCGTAATTCAACATATTCCAATACAACAG
CCACAACAAATAAGTAACAATGCTCGTGATAAAGAAAAGCCAAATATTGTGCAAGTCTTA
AAACAAAGTCCTGTTGAATATCATATTCAACAGCAAGAACATGCTGCAATGGTTGTTGCA
CAAATGAATCAAAAGTCTGGAATAACGAGTCCTTTTCTTAATAGTACTATTAAATATGAA
TTACATGGACAGCCAGTTCAATTAGTAACTGAAGTTTTTCCACACACACTTATAACTGAG
GCAGCAAAGTCGGATGATCTCACATCTCAGTCGTCAGTTTCTTCTGTAGCTTCCTCCGTA
AATAACCAAACAACAACTACAACTACTGGTCCAGTTTTAAGCAATGGTGAAACTATGGAA
AAACAACATAAATGCTTAATTTGTGATAAATTTTTTACTACTGTCGCCAATTTAAATATG
CATTTGAAGGTTCATTCTGGAGATAAACCCTATAAATGTTCCGTTTGTGGAAAAGGTTTT
ATACAAAGTAATAATCTATCAACACATTTAAAAGTTCACACAGGTGAACGTCCACACTCA
TGTTCGATTTGTGGCAAAAGATTTTCACAATCAAATAATTTAAAGACTCACATAAGGACA
CATACAGGTGAAAAACCATATCGATGTAGCTTATGTGAAAAATCATTTAATCAAAAAAAT
AACTTGACTACTCATCTTCGAACTCATTCTGAATACCATCCTAGTAGTTGCAGCATGTGC
AAGCAAAACTTTTCATCATTTAATGAATTATTTAATCACATGCGACAACATGCAGAAGAA
AAACCACATATTTGTACAATCTGTAATAAAGTATTGAGTTGCCAGAATGATCTCAATGAG
CATATGAAACAACATACACAACCGAAGCCATATAAATGTGATATTTGTCAAAAACAATTT
ACGCAATCAAATAATTTGAAGACGCATATTAAAACTCATATTTATCAAGATCCCTATAAA
TGCACAATGTGCACAAGATCTTTTCAGGATCAAGAAGAATACACAATGCATATTCGAGTT
CATACCTTAGATAAACCATACGAATGCACTTACTGCAAGAAGAAATTCATTCAAAGTAAC
AATTTAAAGACTCATTTACGTACACATACAGGTGAACGACCATATAAGTGTTCAACGTGT
GGGAAATCATTCAATCAAAAGAATAATTTAAATACTCATAATCGAGTTCATACTGGTGAA
AAACCATTCGAATGTCATCTTTGTGATCGCCGATTTAATCAAAGCAACAATTTAAATAAA
CATCTTAAAACACATGGACAAGAAAAAGATTTACCAAGAGCGATGGAAAATGAAATGGAC
AAATTAATGAATACAGTCATCATGTCACAGCAACAAAACTAA
>g6706.t1 Gene=g6706 Length=613
MLANNSQQKQIILPVYPAVIISGQKLNTSASAATVIGIEQSQNQKCHICQKDFPSMIAFQ
NHVKEQHLDGKVYRNIIAVSTVNSPVTMIPAQVANVQQQQYQIATTNTPVKLEKDYNHSK
SHTILHTSDVLKQTYQTTPANFSQVSVNVTPVIQHIPIQQPQQISNNARDKEKPNIVQVL
KQSPVEYHIQQQEHAAMVVAQMNQKSGITSPFLNSTIKYELHGQPVQLVTEVFPHTLITE
AAKSDDLTSQSSVSSVASSVNNQTTTTTTGPVLSNGETMEKQHKCLICDKFFTTVANLNM
HLKVHSGDKPYKCSVCGKGFIQSNNLSTHLKVHTGERPHSCSICGKRFSQSNNLKTHIRT
HTGEKPYRCSLCEKSFNQKNNLTTHLRTHSEYHPSSCSMCKQNFSSFNELFNHMRQHAEE
KPHICTICNKVLSCQNDLNEHMKQHTQPKPYKCDICQKQFTQSNNLKTHIKTHIYQDPYK
CTMCTRSFQDQEEYTMHIRVHTLDKPYECTYCKKKFIQSNNLKTHLRTHTGERPYKCSTC
GKSFNQKNNLNTHNRVHTGEKPFECHLCDRRFNQSNNLNKHLKTHGQEKDLPRAMENEMD
KLMNTVIMSQQQN
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 34 | g6706.t1 | Coils | Coil | Coil | 608 | 613 | - |
| 32 | g6706.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 281 | 310 | 9.0E-10 |
| 26 | g6706.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 311 | 336 | 3.0E-15 |
| 30 | g6706.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 337 | 363 | 6.6E-18 |
| 25 | g6706.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 364 | 387 | 2.4E-14 |
| 33 | g6706.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 388 | 448 | 3.5E-12 |
| 24 | g6706.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 449 | 473 | 5.6E-11 |
| 29 | g6706.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 477 | 507 | 5.0E-8 |
| 28 | g6706.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 508 | 529 | 5.9E-14 |
| 31 | g6706.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 530 | 555 | 2.4E-17 |
| 27 | g6706.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 556 | 588 | 9.9E-13 |
| 59 | g6706.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 275 | - |
| 14 | g6706.t1 | PANTHER | PTHR24381 | ZINC FINGER PROTEIN | 138 | 446 | 9.6E-151 |
| 17 | g6706.t1 | PANTHER | PTHR24381:SF113 | ZINC FINGER PROTEIN 384 | 138 | 446 | 9.6E-151 |
| 13 | g6706.t1 | PANTHER | PTHR24381 | ZINC FINGER PROTEIN | 329 | 491 | 9.6E-151 |
| 16 | g6706.t1 | PANTHER | PTHR24381:SF113 | ZINC FINGER PROTEIN 384 | 329 | 491 | 9.6E-151 |
| 12 | g6706.t1 | PANTHER | PTHR24381 | ZINC FINGER PROTEIN | 436 | 590 | 9.6E-151 |
| 15 | g6706.t1 | PANTHER | PTHR24381:SF113 | ZINC FINGER PROTEIN 384 | 436 | 590 | 9.6E-151 |
| 4 | g6706.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 283 | 305 | 0.0042 |
| 6 | g6706.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 311 | 333 | 1.5E-4 |
| 11 | g6706.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 339 | 361 | 1.1E-5 |
| 7 | g6706.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 367 | 389 | 2.0E-5 |
| 1 | g6706.t1 | Pfam | PF13912 | C2H2-type zinc finger | 397 | 418 | 0.0042 |
| 2 | g6706.t1 | Pfam | PF13912 | C2H2-type zinc finger | 423 | 446 | 4.4E-6 |
| 9 | g6706.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 451 | 473 | 1.8E-5 |
| 3 | g6706.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 479 | 501 | 1.9E-4 |
| 5 | g6706.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 507 | 529 | 3.6E-5 |
| 10 | g6706.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 535 | 557 | 3.4E-5 |
| 8 | g6706.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 563 | 585 | 7.4E-5 |
| 46 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 46 | 67 | - |
| 38 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 285 | 305 | - |
| 45 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 313 | 333 | - |
| 41 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 341 | 361 | - |
| 37 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 369 | 389 | - |
| 42 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 397 | 417 | - |
| 43 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 425 | 445 | - |
| 44 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 453 | 473 | - |
| 40 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 481 | 501 | - |
| 36 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 509 | 529 | - |
| 39 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 537 | 557 | - |
| 35 | g6706.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 565 | 585 | - |
| 69 | g6706.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 283 | 310 | 14.17 |
| 70 | g6706.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 311 | 338 | 17.288 |
| 63 | g6706.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 339 | 366 | 17.142 |
| 61 | g6706.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 367 | 394 | 14.482 |
| 68 | g6706.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 395 | 422 | 12.424 |
| 60 | g6706.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 423 | 450 | 11.801 |
| 64 | g6706.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 451 | 478 | 13.671 |
| 62 | g6706.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 479 | 506 | 13.9 |
| 66 | g6706.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 507 | 534 | 16.643 |
| 67 | g6706.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 535 | 562 | 18.368 |
| 65 | g6706.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 563 | 590 | 13.484 |
| 54 | g6706.t1 | SMART | SM00355 | c2h2final6 | 44 | 67 | 0.012 |
| 48 | g6706.t1 | SMART | SM00355 | c2h2final6 | 283 | 305 | 0.0016 |
| 50 | g6706.t1 | SMART | SM00355 | c2h2final6 | 311 | 333 | 5.5E-4 |
| 58 | g6706.t1 | SMART | SM00355 | c2h2final6 | 339 | 361 | 1.9E-4 |
| 51 | g6706.t1 | SMART | SM00355 | c2h2final6 | 367 | 389 | 9.3E-5 |
| 53 | g6706.t1 | SMART | SM00355 | c2h2final6 | 395 | 417 | 0.14 |
| 56 | g6706.t1 | SMART | SM00355 | c2h2final6 | 423 | 445 | 0.0057 |
| 55 | g6706.t1 | SMART | SM00355 | c2h2final6 | 451 | 473 | 1.3E-4 |
| 47 | g6706.t1 | SMART | SM00355 | c2h2final6 | 479 | 501 | 0.0011 |
| 49 | g6706.t1 | SMART | SM00355 | c2h2final6 | 507 | 529 | 8.9E-4 |
| 57 | g6706.t1 | SMART | SM00355 | c2h2final6 | 535 | 557 | 1.4E-4 |
| 52 | g6706.t1 | SMART | SM00355 | c2h2final6 | 563 | 585 | 8.7E-4 |
| 21 | g6706.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 281 | 333 | 1.91E-16 |
| 18 | g6706.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 320 | 376 | 4.09E-22 |
| 22 | g6706.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 375 | 430 | 1.21E-13 |
| 20 | g6706.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 417 | 469 | 1.39E-15 |
| 19 | g6706.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 488 | 544 | 3.9E-19 |
| 23 | g6706.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 529 | 581 | 2.8E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
- This transcript has been annotated with K09228 (KRAB domain-containing zinc finger protein)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
