General information for g6706.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 235.
Parent gene
- The parent gene g6706 is located on chr_2: 18138200..18140964 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6706 | g6706.t3 | isoform | g6706.t3 | 18137626 | 18140964 |
| chr_2 | g6706 | g6706.t3 | exon | g6706.t3.exon1 | 18137626 | 18138317 |
| chr_2 | g6706 | g6706.t3 | exon | g6706.t3.exon2 | 18138377 | 18138425 |
| chr_2 | g6706 | g6706.t3 | exon | g6706.t3.exon3 | 18138481 | 18138514 |
| chr_2 | g6706 | g6706.t3 | exon | g6706.t3.exon4 | 18138578 | 18138627 |
| chr_2 | g6706 | g6706.t3 | exon | g6706.t3.exon5 | 18138689 | 18138917 |
| chr_2 | g6706 | g6706.t3 | exon | g6706.t3.exon6 | 18138969 | 18139227 |
| chr_2 | g6706 | g6706.t3 | exon | g6706.t3.exon7 | 18139356 | 18139438 |
| chr_2 | g6706 | g6706.t3 | cds | g6706.t3.CDS1 | 18139370 | 18139438 |
| chr_2 | g6706 | g6706.t3 | exon | g6706.t3.exon8 | 18139507 | 18139529 |
| chr_2 | g6706 | g6706.t3 | cds | g6706.t3.CDS2 | 18139507 | 18139529 |
| chr_2 | g6706 | g6706.t3 | exon | g6706.t3.exon9 | 18139591 | 18139659 |
| chr_2 | g6706 | g6706.t3 | cds | g6706.t3.CDS3 | 18139591 | 18139659 |
| chr_2 | g6706 | g6706.t3 | exon | g6706.t3.exon10 | 18139720 | 18140663 |
| chr_2 | g6706 | g6706.t3 | cds | g6706.t3.CDS4 | 18139720 | 18140653 |
| chr_2 | g6706 | g6706.t3 | exon | g6706.t3.exon11 | 18140765 | 18140964 |
| chr_2 | g6706 | g6706.t3 | TSS | g6706.t3 | 18140961 | 18140961 |
| chr_2 | g6706 | g6706.t3 | TTS | g6706.t3 | NA | NA |
Sequences
>g6706.t3 Gene=g6706 Length=2632
ACATAAAAATATGAATTTTATTTTGTACGACAAAAGTAAACTATAAATTAAAAAAAAAAC
ATAATGAAATATTAGAAGTTTTTGTAGTCAACACTCTAAATCATCATAATAAAAGATTAG
AAATTGATGAAAAACAAGTGGAGAATTGTGCAAATTTAAAATTGATTTGAAAAACACCTT
TTTTAAAGGTGTATTGAAAAAATATAGAGAATGCTTGCAAACAATTCTCAGCAAAAGCAA
ATAATTCTTCCAGTCTATCCAGCAGTAATTATATCAGGACAAAAACTCAATACGTCCGCA
TCTGCAGCAACAGTGATTGGTATTGAACAATCTCAGAATCAAAAATGTCACATTTGTCAA
AAAGATTTTCCATCGATGATTGCCTTTCAAAATCACGTGAAAGAGCAGCATCTGGATGGA
AAAGTTTATCGAAATATAATTGCTGTTTCGACAGTCAATAGTCCAGTAACAATGATACCC
GCACAAGTTGCAAATGTTCAGCAGCAACAATACCAAATTGCGACAACAAATACACCAGTT
AAATTGGAAAAGGATTATAATCATTCTAAAAGTCACACTATACTACACACGTCTGATGTT
CTTAAACAAACCTATCAAACGACACCGGCTAATTTTTCACAAGTTAGTGTCAACGTAACG
CCCGTAATTCAACATATTCCAATACAACAGCCACAACAAATAAGTAACAATGCTCGTGAT
AAAGAAAAGCCAAATATTGTGCAAGTCTTAAAACAAAGTCCTGTTGAATATCATATTCAA
CAGCAAGAACATGCTGCAATGGTTGTTGCACAAATGAATCAAAAGTCTGGAATAACGAGT
CCTTTTCTTAATAGTACTATTAAATATGAATTACATGGACAGCCAGTTCAATTAGTAACT
GAAGTTTTTCCACACACACTTATAACTGAGGCAGCAAAGTCGGATGATCTCACATCTCAG
TCGTCAGTTTCTTCTGTAGCTTCCTCCGTAAATAACCAAACAACAACTACAACTACTGGT
CCAGTTTTAAGCAATGGTGAAACTATGGAAAAACAACATAAATGCTTAATTTGTGATAAA
TTTTTTACTACTGTCGCCAATTTAAATATGCATTTGAAGGTTCATTCTGGAGATAAACCC
TATAAATGTTCCGTTTGTGGAAAAGGTTTTATACAAAGTAATAATCTATCAACACATTTA
AAAGTTCACACAGGTGAACGTCCACACTCATGTTCGATTTGTGGCAAAAGATTTTCACAA
TCAAATAATTTAAAGACTCACATAAGGACACATACAGGTTTTTAATGAAAAAATTATTAA
TGTAGCTTATGTGAAAAATCATTTAATCAAAAAAATAACTTGACTACTCATCTTCGAACT
CATTCTGAATACCATCCTAGTAGTTGCAGCATGTGCAAGCAAAACTTTTCATCATTTAAT
GAATTATTTAATCACATGCGACAACATGCAGAAGAAAAACCACATATTTGTACAATCTGT
AATAAAGTATTGAGTTGCCAGAATGATCTCAATGAGCATATGAAACAACATACACAACCG
AAGCCATATAAATGTGATATTTGTCAAAAACAATTTACGCAATCAAATAATTTGAAGACG
CATATTAAAACTCATATTTATCAAGATCCCTATAAATGCACAATGTGCACAAGATCTTTT
CAGGATCAAGAAGAATACACAATGCATATTCGAGTTCATACCTTAGATAAACCATACGAA
TGCACTTACTGCAAGAAGAAATTCATTCAAAGTAACAATTTAAAGACTCATTTACGTACA
CATACAGGTGAACGACCATATAAGTGTTCAACGTGTGGGAAATCATTCAATCAAAAGAAT
AATTTAAATACTCATAATCGAGTTCATACTGGTGAAAAACCATTCGAATGTCATCTTTGT
GATCGCCGATTTAATCAAAGCAACAATTTAAATAAACATCTTAAAACACATGGACAAGAA
AAAGATTTACCAAGAGCGATGGAAAATGAAATGGACAAATTAATGAATACAGTCATCATG
TCACAGCAACAAAACTAAATTTTGTGCTTTTACTGGCTTTTGCATAAAATTTATTTTCTA
AATGTTAGCTAATATGATAGAACTCATTCATTAAAAAATTTAATGTCCATTGGCCAATAT
ACGTAATTTATATTTAATATGTTGCCGCTATATCGTCAAATATAGAAGAAATCATTTTAA
AAATTAAACTCTTCCAAATTCGAATTTATAAAAATGACGATAGTTTTCTTGTTCCTTCCT
TAAAAAGCTTCTTTTATATAGTTTTTAAAAAAGTATAAACATGATATATTGCTATTATGC
TGCAATAGACTTTTGGTTCGAATGTATTTTTGCAGTAAAAGATTCATTTTTAAATGTTAA
ATAGGCAATAGTTAGTTAAGCTTTTAAGAAAATTATTATTCTCTATATGTGAACTACATA
TGATGAATAACTAACTGAATGAAAACAAGAATAGATGTTTAATATTAAATGAAGGAAAAA
ATTTATTCAGAAATAAATGCATAAATGTATGAAAAAATATATATATCACGCTTTAATAAA
AAGTGTATGGATATATAACAATCAACAAAAGGAATACAGTTCCATAAAAAAT
>g6706.t3 Gene=g6706 Length=364
MLANNSQQKQIILPVYPAVIISGQKLNTSASAATVIGIEQSQNQKCHICQKDFPSMIAFQ
NHVKEQHLDGKVYRNIIAVSTVNSPVTMIPAQVANVQQQQYQIATTNTPVKLEKDYNHSK
SHTILHTSDVLKQTYQTTPANFSQVSVNVTPVIQHIPIQQPQQISNNARDKEKPNIVQVL
KQSPVEYHIQQQEHAAMVVAQMNQKSGITSPFLNSTIKYELHGQPVQLVTEVFPHTLITE
AAKSDDLTSQSSVSSVASSVNNQTTTTTTGPVLSNGETMEKQHKCLICDKFFTTVANLNM
HLKVHSGDKPYKCSVCGKGFIQSNNLSTHLKVHTGERPHSCSICGKRFSQSNNLKTHIRT
HTGF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g6706.t3 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 281 | 309 | 5.3E-10 |
| 7 | g6706.t3 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 310 | 335 | 1.2E-15 |
| 9 | g6706.t3 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 336 | 363 | 9.2E-15 |
| 18 | g6706.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 275 | - |
| 4 | g6706.t3 | PANTHER | PTHR16515 | PR DOMAIN ZINC FINGER PROTEIN | 42 | 363 | 2.1E-36 |
| 1 | g6706.t3 | Pfam | PF00096 | Zinc finger, C2H2 type | 283 | 305 | 0.0022 |
| 2 | g6706.t3 | Pfam | PF00096 | Zinc finger, C2H2 type | 311 | 333 | 7.9E-5 |
| 3 | g6706.t3 | Pfam | PF00096 | Zinc finger, C2H2 type | 339 | 361 | 5.9E-6 |
| 12 | g6706.t3 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 46 | 67 | - |
| 11 | g6706.t3 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 285 | 305 | - |
| 10 | g6706.t3 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 313 | 333 | - |
| 13 | g6706.t3 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 341 | 361 | - |
| 21 | g6706.t3 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 283 | 310 | 14.17 |
| 20 | g6706.t3 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 311 | 338 | 17.288 |
| 19 | g6706.t3 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 339 | 364 | 14.191 |
| 14 | g6706.t3 | SMART | SM00355 | c2h2final6 | 44 | 67 | 0.012 |
| 15 | g6706.t3 | SMART | SM00355 | c2h2final6 | 283 | 305 | 0.0016 |
| 16 | g6706.t3 | SMART | SM00355 | c2h2final6 | 311 | 333 | 5.5E-4 |
| 17 | g6706.t3 | SMART | SM00355 | c2h2final6 | 339 | 361 | 1.9E-4 |
| 5 | g6706.t3 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 278 | 320 | 3.13E-13 |
| 6 | g6706.t3 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 309 | 361 | 4.06E-19 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
