Gene loci information

Transcript annotation

  • This transcript has been annotated as Potassium voltage-gated channel subfamily KQT member 5.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6712 g6712.t5 isoform g6712.t5 18214343 18259288
chr_2 g6712 g6712.t5 exon g6712.t5.exon1 18214343 18214623
chr_2 g6712 g6712.t5 cds g6712.t5.CDS1 18214343 18214623
chr_2 g6712 g6712.t5 exon g6712.t5.exon2 18231884 18232072
chr_2 g6712 g6712.t5 cds g6712.t5.CDS2 18231884 18232072
chr_2 g6712 g6712.t5 exon g6712.t5.exon3 18232816 18232950
chr_2 g6712 g6712.t5 cds g6712.t5.CDS3 18232816 18232950
chr_2 g6712 g6712.t5 exon g6712.t5.exon4 18234313 18234395
chr_2 g6712 g6712.t5 cds g6712.t5.CDS4 18234313 18234395
chr_2 g6712 g6712.t5 exon g6712.t5.exon5 18234456 18234628
chr_2 g6712 g6712.t5 cds g6712.t5.CDS5 18234456 18234628
chr_2 g6712 g6712.t5 exon g6712.t5.exon6 18236100 18236228
chr_2 g6712 g6712.t5 cds g6712.t5.CDS6 18236100 18236228
chr_2 g6712 g6712.t5 exon g6712.t5.exon7 18236310 18236325
chr_2 g6712 g6712.t5 cds g6712.t5.CDS7 18236310 18236325
chr_2 g6712 g6712.t5 exon g6712.t5.exon8 18236449 18236543
chr_2 g6712 g6712.t5 cds g6712.t5.CDS8 18236449 18236543
chr_2 g6712 g6712.t5 exon g6712.t5.exon9 18237164 18237351
chr_2 g6712 g6712.t5 cds g6712.t5.CDS9 18237164 18237351
chr_2 g6712 g6712.t5 exon g6712.t5.exon10 18245999 18246180
chr_2 g6712 g6712.t5 cds g6712.t5.CDS10 18245999 18246180
chr_2 g6712 g6712.t5 exon g6712.t5.exon11 18246264 18246350
chr_2 g6712 g6712.t5 cds g6712.t5.CDS11 18246264 18246350
chr_2 g6712 g6712.t5 exon g6712.t5.exon12 18248348 18248418
chr_2 g6712 g6712.t5 cds g6712.t5.CDS12 18248348 18248418
chr_2 g6712 g6712.t5 exon g6712.t5.exon13 18249332 18249459
chr_2 g6712 g6712.t5 cds g6712.t5.CDS13 18249332 18249459
chr_2 g6712 g6712.t5 exon g6712.t5.exon14 18253087 18253183
chr_2 g6712 g6712.t5 cds g6712.t5.CDS14 18253087 18253183
chr_2 g6712 g6712.t5 exon g6712.t5.exon15 18253342 18253560
chr_2 g6712 g6712.t5 cds g6712.t5.CDS15 18253342 18253560
chr_2 g6712 g6712.t5 exon g6712.t5.exon16 18253915 18254102
chr_2 g6712 g6712.t5 cds g6712.t5.CDS16 18253915 18254102
chr_2 g6712 g6712.t5 exon g6712.t5.exon17 18254193 18254347
chr_2 g6712 g6712.t5 cds g6712.t5.CDS17 18254193 18254347
chr_2 g6712 g6712.t5 exon g6712.t5.exon18 18258883 18259091
chr_2 g6712 g6712.t5 cds g6712.t5.CDS18 18258883 18259091
chr_2 g6712 g6712.t5 exon g6712.t5.exon19 18259163 18259288
chr_2 g6712 g6712.t5 cds g6712.t5.CDS19 18259163 18259288
chr_2 g6712 g6712.t5 TSS g6712.t5 NA NA
chr_2 g6712 g6712.t5 TTS g6712.t5 NA NA

Sequences

>g6712.t5 Gene=g6712 Length=2751
ATGACAACGCAGAACGATAATGCATCATCTACAGCAGCTTCAGCAACAATCTCGGCAAGG
AGAAAGTCATCAATTCTTGCTGCTTTGTCCTTGAATTATAATATTCCAACAATACCAATT
ATCAATGAACCATCCACAATCATGACAACAACACCTGAATCAGCAACAGCTGCGGATATT
AAAAAGAAATCATTAAGGTTTGATACAAGTATGCTGGCTACGGAATACGAAACTGACGAG
ATTAAAGAAACGAAGCGAAGGATCACTGATGAGATCAAAAGTGTTTGCAAATTATCCGAC
AAAAATAGAGTTGACAGACTTTCAAGGCCCCGAATGTCTTTACTCGGGAAGCCCCTCAAT
TATAATCGAGGAGCCCGACGAGATGCTCGCTATCGGCGCCTTCAATCACGTGTATACAAC
TTTCTTGAACGTCCTCGTGGGCTGCCAGCCGTTATCTATCATGTATTGGTATTTTTAATG
GTTTTCACATGTTTGGCCTTGAGTGTCTTTTCGACAATCGAAGAGTTCGAAAAGGAGGCA
CTGTCTTTGCTATTTGTTATGGAAATCATTGTCGTGATATGGTTTACTATAGAATTTGGA
CTCAGGATATGGGCATCAGGATGTCGTTCGAGATATCAAGGAGGCATAGGCCGACTGAAA
TTTCTAAAAAGACCATTCTGTATTATAGACATAATAACAATAGCAGCATCAATTGTTGTA
ATCAGTATAGGAGCATCGAGTATGTTTGCAACAAGTGCTCTTCGTGGTCTACGTTTTTTC
CAAATCCTTCGAATGGTTCGCATGGATCGACGAGGTGGTACTTGGAAACTATTAGGAAGT
GTGGTGTACGCCCATAGACAAGAACTCATAACAACTTTGTATATTGGATTTCTAGGCCTT
ATATTCGCTTCATTTTTAGTTTATTTAATAGAAAAAGACATTCAAAACACAAAATTTAAG
AACTTCGCTCAAGCATTATGGTGGGGTGTTATTACTTTGTGCACAGTTGGCTATGGGGAT
ATGGTTCCGGAAACTTGGCAAGGAAAAATTGTTGCATCATTCTGTGCACTCCTCGGAATA
TCATTTTTCGCATTGCCCGCGGGTATTTTGGGCAGTGGATTTGCTTTAAAAGTACAACAG
CAACAGAGACAGAAACATATGATCCGAAGAAGACAACCTGCGGCTACATTGATACAATCA
TTATGGCGATGTTATGCAGCAGATGAACATTCCTTATCAGAAGCAACATGGAAAATTCAC
CAAGTGCCATTGCCTTCTCCTCCTCCATCGCGAGCATCATCGAGCTTTAAGCACAACGCA
TCATTTGTGGCGAGACTTCCAACGATTCGACGGCATAAAAGTCAATCACTTCACTCACCG
GGTCAGAATCTGAAGCCAAGTGGGGGTAGTCAACGTGGTCGAAATTGTCCAAGGACAATG
AATGAAATCAATAATTCCGCTGAGAATCTTGATGTAACCAACAATGGAAAGCCAATGAAC
GCGAGTCTATCAGAGGATTCAGTTGCAGAAACTGCTCTTGCCAAAAAGAATTCCGACGAT
GAAGACGATGAACCCCGATGTGTTCAATTGACAAATCAACACAAGGGAGCAATTCGATTC
ATCAGAAAGATGAAATATTTCGTTGCACGAAGGAAATTCAAAGAAGCGCTTAAACCTTAT
GATGTAAAAGATGTGATGGAACAATACGCATCAGGTCATGTTGATCTACTAGGACGCGTA
AAAAATGTTCAAACTAGACTCGACCAGATATTAGGAAAGCAGGGGTCCAAAGCAAAAGAT
GTATATGCGTCAAAAATTAGCCTGGCATCCCGTGTTGTAAAAATTGAAAGACAGGTCGAC
GATGTTGAAACCAAATTAGATAATTTGATTGAATTGTATATGCAAGACAGGAAGCGTTTA
CTTTCACTTCCGATTTGTCCCGATTCATCACATTCCAATAATCTTCCACCGCAACTGCCA
CCACCAAATGGTTCGGGTTCATCGATCGTAATTAGCAATAATATGGCAGTAAACAGTAGT
ACTAATGGTGCTAGTAGTAGTGGATCATTAAAGCCTAAGCCAATTTTAGTTGATAAACAA
TCAAGCGAGCCTAATTCTCCAATCGCCAAATCTTTTGATGATCATCAACAAAAACATCAA
AAACAGCATCAACTGCAACAGCAGCAACATCAAAATCGTCCACCAATGCATCGTGGATTT
TCAGATTTAGGCAATAGAATGAAGAAGCGAGTAACATTAAGCGGTAATAGTGGTGACGTT
GTGATAGTTGTACCATCAATGGACAACCTTCCTGAAGCTGTTCGATCTGATACTCATCCA
CATCATCATATCTGCATCGATGCAGAAGGTGAAGTAGAAGCACCAAATAGTCCTAAAACT
ATAACTGAAAGTTCAATGGTAATGTTTGAAGAAGAGGAAGTTGAAGATGAATTAGACGAA
GAAGAAGATCTTGATATTGGTACTGAAATAGATACCGATTCGCCACCTTGGGATTTCTTA
CATGTCGAGCCTGAGATCGATGATAATGATGATTCTAATGAAGATACTGCTCTTTTACGT
TCAAAAGCTAAAAGAACGGAAATAGTAATAACACCAATTAGTCCTGTAAGTTCATCAAAT
GATATTGTTCGTATGGGACATGATAGTCGTAGAAATGTGACCCGAGGAATGGATTTGCTT
AAACCAGATATACAACAGTCATCATCTCAACGGATTTCCGAAGAAATTTGA

>g6712.t5 Gene=g6712 Length=916
MTTQNDNASSTAASATISARRKSSILAALSLNYNIPTIPIINEPSTIMTTTPESATAADI
KKKSLRFDTSMLATEYETDEIKETKRRITDEIKSVCKLSDKNRVDRLSRPRMSLLGKPLN
YNRGARRDARYRRLQSRVYNFLERPRGLPAVIYHVLVFLMVFTCLALSVFSTIEEFEKEA
LSLLFVMEIIVVIWFTIEFGLRIWASGCRSRYQGGIGRLKFLKRPFCIIDIITIAASIVV
ISIGASSMFATSALRGLRFFQILRMVRMDRRGGTWKLLGSVVYAHRQELITTLYIGFLGL
IFASFLVYLIEKDIQNTKFKNFAQALWWGVITLCTVGYGDMVPETWQGKIVASFCALLGI
SFFALPAGILGSGFALKVQQQQRQKHMIRRRQPAATLIQSLWRCYAADEHSLSEATWKIH
QVPLPSPPPSRASSSFKHNASFVARLPTIRRHKSQSLHSPGQNLKPSGGSQRGRNCPRTM
NEINNSAENLDVTNNGKPMNASLSEDSVAETALAKKNSDDEDDEPRCVQLTNQHKGAIRF
IRKMKYFVARRKFKEALKPYDVKDVMEQYASGHVDLLGRVKNVQTRLDQILGKQGSKAKD
VYASKISLASRVVKIERQVDDVETKLDNLIELYMQDRKRLLSLPICPDSSHSNNLPPQLP
PPNGSGSSIVISNNMAVNSSTNGASSSGSLKPKPILVDKQSSEPNSPIAKSFDDHQQKHQ
KQHQLQQQQHQNRPPMHRGFSDLGNRMKKRVTLSGNSGDVVIVVPSMDNLPEAVRSDTHP
HHHICIDAEGEVEAPNSPKTITESSMVMFEEEEVEDELDEEEDLDIGTEIDTDSPPWDFL
HVEPEIDDNDDSNEDTALLRSKAKRTEIVITPISPVSSSNDIVRMGHDSRRNVTRGMDLL
KPDIQQSSSQRISEEI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
15 g6712.t5 Coils Coil Coil 612 632 -
14 g6712.t5 Gene3D G3DSA:1.10.287.70 - 150 377 6.9E-61
39 g6712.t5 MobiDBLite mobidb-lite consensus disorder prediction 451 474 -
36 g6712.t5 MobiDBLite mobidb-lite consensus disorder prediction 453 474 -
38 g6712.t5 MobiDBLite mobidb-lite consensus disorder prediction 501 525 -
35 g6712.t5 MobiDBLite mobidb-lite consensus disorder prediction 699 735 -
37 g6712.t5 MobiDBLite mobidb-lite consensus disorder prediction 893 916 -
34 g6712.t5 MobiDBLite mobidb-lite consensus disorder prediction 901 916 -
3 g6712.t5 PANTHER PTHR11537:SF259 KCNQ POTASSIUM CHANNEL, ISOFORM F 98 703 2.3E-284
4 g6712.t5 PANTHER PTHR11537 VOLTAGE-GATED POTASSIUM CHANNEL 98 703 2.3E-284
7 g6712.t5 PRINTS PR00169 Potassium channel signature 186 209 2.6E-25
12 g6712.t5 PRINTS PR01459 KCNQ voltage-gated potassium channel family signature 194 213 8.8E-22
10 g6712.t5 PRINTS PR01459 KCNQ voltage-gated potassium channel family signature 214 233 8.8E-22
9 g6712.t5 PRINTS PR00169 Potassium channel signature 259 285 2.6E-25
11 g6712.t5 PRINTS PR01459 KCNQ voltage-gated potassium channel family signature 275 294 8.8E-22
6 g6712.t5 PRINTS PR00169 Potassium channel signature 288 311 2.6E-25
5 g6712.t5 PRINTS PR00169 Potassium channel signature 319 341 2.6E-25
8 g6712.t5 PRINTS PR00169 Potassium channel signature 348 374 2.6E-25
2 g6712.t5 Pfam PF00520 Ion transport protein 154 379 2.3E-30
1 g6712.t5 Pfam PF03520 KCNQ voltage-gated potassium channel 528 637 1.2E-33
17 g6712.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 150 -
24 g6712.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 151 171 -
22 g6712.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 172 182 -
25 g6712.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 183 205 -
16 g6712.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 206 225 -
28 g6712.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 226 250 -
21 g6712.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 251 288 -
27 g6712.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 289 310 -
19 g6712.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 311 321 -
26 g6712.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 322 339 -
20 g6712.t5 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 340 350 -
23 g6712.t5 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 351 376 -
18 g6712.t5 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 377 916 -
13 g6712.t5 SUPERFAMILY SSF81324 Voltage-gated potassium channels 146 375 1.64E-46
31 g6712.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 151 173 -
29 g6712.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 183 205 -
30 g6712.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 226 248 -
33 g6712.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 288 310 -
32 g6712.t5 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 350 372 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016020 membrane CC
GO:0055085 transmembrane transport BP
GO:0006813 potassium ion transport BP
GO:0005249 voltage-gated potassium channel activity MF
GO:0005216 ion channel activity MF
GO:0006811 ion transport BP
GO:0008076 voltage-gated potassium channel complex CC

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed