General information for g6714.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g6714 is located on chr_2: 18272973..18274614 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6714 | g6714.t5 | isoform | g6714.t5 | 18268746 | 18269967 |
| chr_2 | g6714 | g6714.t5 | exon | g6714.t5.exon1 | 18268746 | 18269871 |
| chr_2 | g6714 | g6714.t5 | cds | g6714.t5.CDS1 | 18269090 | 18269290 |
| chr_2 | g6714 | g6714.t5 | exon | g6714.t5.exon2 | 18269941 | 18269967 |
| chr_2 | g6714 | g6714.t5 | TSS | g6714.t5 | NA | NA |
| chr_2 | g6714 | g6714.t5 | TTS | g6714.t5 | NA | NA |
Sequences
>g6714.t5 Gene=g6714 Length=1153
AATTTTTATTAGCTCATCCAGACAAATTCAAATACTTAAATCAAGGTCAATCACCTGTAA
TTCCAAAAATCATAGACGAAGATGAGTTTAATGAAACATTAAAGGCGTTTTCAACTTTAG
GATTCACTACAGATGAAGTAAACAATATTATAAGAGTGATTGCAGGAATTTTACATTTAG
GAAATATCTCAATCAATGCAGCTGATCAGGAGTCTTGCTCTATTGCTTCAAATGACTTAT
CACTTGGAATACTCAGTGACATATTATCTCTTAATAAAACTGATTTACTTAAATGGTTAA
CAACACGCCAAATTGAATCAATCAATGATACTGTGCTCATTCCGATGAATAAAGCAACAG
CAGAAGCTGCCAGAGATGCTCTAGCTAAACATATTTATTCAAAACTTTTTCTTTATATTG
TGAAAACTATTAATCGCAATTTAGATATGGGTAAAAAGGATGAGAATTTTATAGGAGTCT
TAGATATTTATGGGTTTGAAACATTTGAATTCAATTCCTTTGAGGTGGGTTACAAACTTC
GATGAGTATAAAACTAATTTTTTAAAATATTTTCTAAATAATTCATTTTATTAATATCAT
TTTTATTTTCTCTTAGCAATTTTGTATCAATTATGCAAATGAGAAATTACAGCAACAATT
TAATCAGCATGTGTTCAAGTTAGAACAGGAGCAGTACCTGAAAGAAGGAATTATTTGGAA
TATGATAGACTTTTATGATAATCAGCCCTGTATTGACTTGATTGAATCAAAATTAGGAAT
TTTAGATTTACTTGATGATGAATGTCGTGTACCCAATGGTTCAGATGATTCATGGATAGT
GAAACTTAATGAAAAGTGTGGAAAGTACAAGCATTTTGAAAAACCGCGATTCGGAATGAC
TGCATTTCTTGTTAAACATTTTTCGGACACAGTTCAATACGAGAGTTTTGGATTCCTAGA
GAAAAATCGAGATACTGTTTCGAAAGAATTGGTGAATGTTGTTCAACAATCTGATGTAGA
TTTTTGCCGTCATTTAATGCTTCTTGATGAAAAAAATGATAAAACTAAATCTCTCCAAAC
TGGTACAAGTAGCTTAAAAGTTGTTGTCAGTGCATCTAAACTACAGTCTGTAAAATCGGA
TGTCCGTTCAAAA
>g6714.t5 Gene=g6714 Length=66
MNKATAEAARDALAKHIYSKLFLYIVKTINRNLDMGKKDENFIGVLDIYGFETFEFNSFE
VGYKLR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g6714.t5 | Gene3D | G3DSA:1.20.120.720 | - | 1 | 58 | 0.000 |
| 2 | g6714.t5 | PANTHER | PTHR13140:SF313 | UNCONVENTIONAL MYOSIN-VC | 1 | 60 | 0.000 |
| 3 | g6714.t5 | PANTHER | PTHR13140 | MYOSIN | 1 | 60 | 0.000 |
| 1 | g6714.t5 | Pfam | PF00063 | Myosin head (motor domain) | 2 | 60 | 0.000 |
| 6 | g6714.t5 | ProSiteProfiles | PS51456 | Myosin motor domain profile. | 1 | 66 | 25.239 |
| 4 | g6714.t5 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2 | 60 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016459 | myosin complex | CC |
| GO:0003774 | cytoskeletal motor activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
