General information for g6714.t6
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Unconventional myosin-Va.
Parent gene
- The parent gene g6714 is located on chr_2: 18272973..18274614 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_2 | g6714 | g6714.t6 | isoform | g6714.t6 | 18272973 | 18274614 |
| chr_2 | g6714 | g6714.t6 | exon | g6714.t6.exon1 | 18272973 | 18273737 |
| chr_2 | g6714 | g6714.t6 | cds | g6714.t6.CDS1 | 18273090 | 18273737 |
| chr_2 | g6714 | g6714.t6 | exon | g6714.t6.exon2 | 18273794 | 18274027 |
| chr_2 | g6714 | g6714.t6 | cds | g6714.t6.CDS2 | 18273794 | 18274027 |
| chr_2 | g6714 | g6714.t6 | exon | g6714.t6.exon3 | 18274090 | 18274614 |
| chr_2 | g6714 | g6714.t6 | cds | g6714.t6.CDS3 | 18274090 | 18274227 |
| chr_2 | g6714 | g6714.t6 | TSS | g6714.t6 | NA | NA |
| chr_2 | g6714 | g6714.t6 | TTS | g6714.t6 | NA | NA |
Sequences
>g6714.t6 Gene=g6714 Length=1524
GGCATTCTTAAGCACCAGAATTCAGATGAGTTGAAAATTGTACAACGTTTAGTTCATGAA
TTAACACCAAGAATAGCAATCACATTACTTCCGAGTCTTCCTGCTTATATTCTTTTCATG
TGTATTAGATACACAGATTTGTTAAATGCAGATGATCAAGTGAAATCATTATTAACTAAT
TTTATTCTAGCAGTAAAAAAGATTTTTAAATCTCCAAGCAAACCTGAAGCACGTATTTTA
TGGATAGTAAATTCTATCACATTACATAACTTACTAAAGCAATACGGAGGAAATGAAGAA
TATATGCGATATAACACAGAACTTCAAAACCAACAACAACTGAAGAATTTTGATTTGTCT
GAATATCGAGTAGTTTTACAAGAGGCAATAATATATATGTATGAATCATTAATAAGACAA
ATTCAAGAATCTATAAAACCTCATATTGTTCCTGCCATTTTACACCATGACGAAACTGCC
CGTGGAAAGAGTCGTCGATCACAAATTTCCGAATCACCAAGTGCTGAAAACAGAATTGAG
CCACAATCTCTAATTGATCAACTAGATTATTTACATAAACAATGCATGTTTTTTGGTCTA
TATGAAGGTTATATAGAGCAAATTTTCCAGCAATTGTTTTACTATATATGTGCAATAGCA
TTGAATAATCTCATGTTGAGACGTGATCTTTGTACTTGGAAAACTGGAATGAAATTAAAA
TTCAACTTGTCTTGTCTTGAAACATGGGTTAAAAAGCAAAAAATGTCAGATTCTATTATA
TCTCCTTCTTCGCCATTGACTGAAGCTGCTCTTTTATTGCAATCACGAAAAACAGATGCA
GATGTGGATAGTATTTGTGAAATTTGTCCATCATTGACTAGTGCACAAATTTTGAAACTT
GTAAAATCTTACACACCAGACGACTGTGAAGACACAATTTCTCCAACATTTATCGAAAAA
TTAAGTGTGAAATTGAAGGAAATTAAAATAAACGATACGTCACTAAACGAAACATTTACT
ATGGACGAAAATCATATAAACCCGTTTAGAGTAATATTCAAATATAATGACATGAAATTA
GAGGACATCGAAATTCCTGAAGTATTGAAGATTGATAATTTAGTTACTAAAATTTAAATT
CTCTACAAATTTTTTTTGATTTTTTTTATATTCAAGTTGTATTTTAATAGTTACCACCCA
AATGAACTTTCTTTGTACTGATTTATTCAAAAATATGTTGCTTAATATTTAAGATGAGAC
TGAATGCTGAGTATCTATGTTATGAAATAACATCATTATATTTTTTAAAATTTAAAAGAA
ATCTATGAGGCTTAAATGGAATATGCACCTGTAAAAGTGACTTAATCAAATATTATGTTC
CAAAAGAAACATAAACATTCCAAGTTATTTATTTATTAACGTTGTAAATCTTAGAAAAGG
CAATTTTAGTAAATAGTATGATGCTACATATTCCTTGATTCATAAACAATATTTGGATAA
AATAAAACCGTACTTACATAAAAT
>g6714.t6 Gene=g6714 Length=339
MCIRYTDLLNADDQVKSLLTNFILAVKKIFKSPSKPEARILWIVNSITLHNLLKQYGGNE
EYMRYNTELQNQQQLKNFDLSEYRVVLQEAIIYMYESLIRQIQESIKPHIVPAILHHDET
ARGKSRRSQISESPSAENRIEPQSLIDQLDYLHKQCMFFGLYEGYIEQIFQQLFYYICAI
ALNNLMLRRDLCTWKTGMKLKFNLSCLETWVKKQKMSDSIISPSSPLTEAALLLQSRKTD
ADVDSICEICPSLTSAQILKLVKSYTPDDCEDTISPTFIEKLSVKLKEIKINDTSLNETF
TMDENHINPFRVIFKYNDMKLEDIEIPEVLKIDNLVTKI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g6714.t6 | PANTHER | PTHR13140:SF273 | UNCONVENTIONAL MYOSIN-VA | 1 | 331 | 0.000 |
| 3 | g6714.t6 | PANTHER | PTHR13140 | MYOSIN | 1 | 331 | 0.000 |
| 1 | g6714.t6 | Pfam | PF01843 | DIL domain | 168 | 269 | 0.000 |
| 5 | g6714.t6 | ProSiteProfiles | PS51126 | Dilute domain profile. | 20 | 288 | 42.084 |
| 4 | g6714.t6 | SMART | SM01132 | DIL_2 | 168 | 271 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
