Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Palmitoleoyl-protein carboxylesterase NOTUM.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6720 g6720.t2 isoform g6720.t2 18300408 18301391
chr_2 g6720 g6720.t2 exon g6720.t2.exon1 18300408 18300817
chr_2 g6720 g6720.t2 cds g6720.t2.CDS1 18300429 18300731
chr_2 g6720 g6720.t2 exon g6720.t2.exon2 18300916 18301114
chr_2 g6720 g6720.t2 exon g6720.t2.exon3 18301200 18301391
chr_2 g6720 g6720.t2 TSS g6720.t2 NA NA
chr_2 g6720 g6720.t2 TTS g6720.t2 NA NA

Sequences

>g6720.t2 Gene=g6720 Length=801
GGTATATGAAAAAGAATTTTTATGAAAAAATATCTTGCTAACAAGAATATAATTTTCTTT
AAAGGAGGCGATTTTGAAAGTAACTCCATCCAGTGGATAGTAGGAAAAACTGAAATGAAC
TCTTCAAATGGATACTCAAACAAGTCTACAAAACTCAAGAGAGTGTTTCTCTCCAATCGA
GACATCACCTGCAATGATGGATCGCAAGCCGGATTCTATTTGCGCAAATCACCAGGATCA
CGCCGTTGGGTAGTATTCTTTGAAGGCGGATGGCATTGCTACGATCATAAATCATGTAAA
ATGCGTTGGACAAAAATGAGGTAAGTGTTTTTTAAAGAAATTTTTTGGAATCAAATTTCA
ATTGTTTTTAATATCCAATTTATAGGCATTTGATGACATCAACTACATGGTGATTCATGG
AGTGGAAATCGATCAAAACCTGAAACACGTGACAGTTTTAGATTTATGGGTTCTTTGATA
GTTCGACAAGTCATTGCCGATTTGATTCCCCTTGGTTTGGGCAATGCTCAGGGTACAGAT
CTTTTAATGGCTGGTTCAAGCGCTGGTGGTTTGGGTGTTATGTTAAATATGGATAAAATC
AGAGCATTTATGTTCGAGGTGTCAGTGATTCAGGATGGTTTTTAGACAGAGAACCATTTT
TACCTGGTACAATCGCTGGAGCAGAAGCTGTACGTCAAGGTTGGAAATTGTGGAACGGTG
TTTTACCAGAAGATTGTGTAGCTGAACAAAAAGAACCATGGAGATGTTATTTCGGTCATC
GACTTTACAATACTTTGAAAT

>g6720.t2 Gene=g6720 Length=100
MKKYLANKNIIFFKGGDFESNSIQWIVGKTEMNSSNGYSNKSTKLKRVFLSNRDITCNDG
SQAGFYLRKSPGSRRWVVFFEGGWHCYDHKSCKMRWTKMR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
2 g6720.t2 PANTHER PTHR21562:SF45 PALMITOLEOYL-PROTEIN CARBOXYLESTERASE NOTUM 33 99 0
3 g6720.t2 PANTHER PTHR21562 NOTUM-RELATED 33 99 0
1 g6720.t2 Pfam PF03283 Pectinacetylesterase 43 98 0

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed