Gene loci information

Transcript annotation

  • This transcript has been annotated as Palmitoleoyl-protein carboxylesterase NOTUM.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_2 g6720 g6720.t3 isoform g6720.t3 18300472 18301929
chr_2 g6720 g6720.t3 exon g6720.t3.exon1 18300472 18300727
chr_2 g6720 g6720.t3 cds g6720.t3.CDS1 18300522 18300727
chr_2 g6720 g6720.t3 exon g6720.t3.exon2 18300793 18301130
chr_2 g6720 g6720.t3 cds g6720.t3.CDS2 18300793 18301130
chr_2 g6720 g6720.t3 exon g6720.t3.exon3 18301188 18301391
chr_2 g6720 g6720.t3 cds g6720.t3.CDS3 18301188 18301391
chr_2 g6720 g6720.t3 exon g6720.t3.exon4 18301462 18301929
chr_2 g6720 g6720.t3 cds g6720.t3.CDS4 18301462 18301928
chr_2 g6720 g6720.t3 TSS g6720.t3 NA NA
chr_2 g6720 g6720.t3 TTS g6720.t3 NA NA

Sequences

>g6720.t3 Gene=g6720 Length=1266
GAGGCGATTTTGAAAGTAACTCCATCCAGTGGATAGTAGGAAAAACTGAAATGAACTCTT
CAAATGGATACTCAAACAAGTCTACAAAACTCAAGAGAGTGTTTCTCTCCAATCGAGACA
TCACCTGCAATGATGGATCGCAAGCCGGATTCTATTTGCGCAAATCACCAGGATCACGCC
GTTGGGTAGTATTCTTTGAAGGCGGATGGCATTGCTACGATCATAAATCATGTAAAATGC
GTTGGACAAAAATGAGGCATTTGATGACATCAACTACATGGCCTGAAACGAGAGATGTCG
GTGGTATTTTATCACCATTACAATCTGAAAATCCATATTGGTTCAATGCAAATCATGTTT
TTGTACCTTACTGTAGTAGTGATTCATGGAGTGGAAATCGATCAAAACCTGAAACACGTG
ACAGTTTTAGATTTATGGGTTCTTTGATAGTTCGACAAGTCATTGCCGATTTGATTCCCC
TTGGTTTGGGCAATGCTCAGGGTACAGATCTTTTAATGGCTGGTTCAAGCGCTGGTGGTT
TGGGTGTTATGTTAAATATGGATAAAATCAGAGCATTTCTTCAAGATGAAAGAGGTCTCA
ATGTACATGTTCGAGGTGTCAGTGATTCAGGATGGTTTTTAGACAGAGAACCATTTTTAC
CTGGTACAATCGCTGGAGCAGAAGCTGTACGTCAAGGTTGGAAATTGTGGAACGGTGTTT
TACCAGAAGATTGTGTAGCTGAACAAAAAGAACCATGGAGATGTTATTTCGGTCATCGAC
TTTACAATACTTTGAAATCGCCTCTTTTTATTTTTCAATGGCTTTTCGATGAGGCACAAA
TGAGAGCTGATAATGTTGGTGCTCCAGTTACACCACAACAATGGGATTATATTCATGAAA
TGGGTGGTGCATTAAGAAAATCACTTGAAAATGTCACTGCTGTTTTTGCACCTTCTTGCA
TCGGACATTCAGTGCTCACAAAACGTGATTGGCAAAATATTAAAATTGACGATGTCTCAT
TAACTGATTCATTAAGATGTTGGGAAAATTCACTTTTGAAAGATAGAAAAATAACATTGA
AATTAAGTGAGAATAAGAGACTTAATAAACATAAAAAACACAAGGGTAGAAATCATCAAA
GTGATCAACCACATCTTACAAATGAAGAAAGAGAGCAAAGAAGAAGAGAACGACGACGCG
AGCAACGAATGAAACTTACACCAGAGGAGCGTGAACAAAGACGATTAGAACGACGTGAAA
GACGAA

>g6720.t3 Gene=g6720 Length=405
MNSSNGYSNKSTKLKRVFLSNRDITCNDGSQAGFYLRKSPGSRRWVVFFEGGWHCYDHKS
CKMRWTKMRHLMTSTTWPETRDVGGILSPLQSENPYWFNANHVFVPYCSSDSWSGNRSKP
ETRDSFRFMGSLIVRQVIADLIPLGLGNAQGTDLLMAGSSAGGLGVMLNMDKIRAFLQDE
RGLNVHVRGVSDSGWFLDREPFLPGTIAGAEAVRQGWKLWNGVLPEDCVAEQKEPWRCYF
GHRLYNTLKSPLFIFQWLFDEAQMRADNVGAPVTPQQWDYIHEMGGALRKSLENVTAVFA
PSCIGHSVLTKRDWQNIKIDDVSLTDSLRCWENSLLKDRKITLKLSENKRLNKHKKHKGR
NHQSDQPHLTNEEREQRRRERRREQRMKLTPEEREQRRLERRERR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
5 g6720.t3 MobiDBLite mobidb-lite consensus disorder prediction 347 405 -
4 g6720.t3 MobiDBLite mobidb-lite consensus disorder prediction 363 405 -
2 g6720.t3 PANTHER PTHR21562:SF45 PALMITOLEOYL-PROTEIN CARBOXYLESTERASE NOTUM 10 343 2.0E-173
3 g6720.t3 PANTHER PTHR21562 NOTUM-RELATED 10 343 2.0E-173
1 g6720.t3 Pfam PF03283 Pectinacetylesterase 14 331 1.2E-69

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0016787 hydrolase activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values