General information for g673.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Egl nine homolog 1.
Parent gene
- The parent gene g673 is located on chr_3: 5207909..5209193 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g673 | g673.t3 | isoform | g673.t3 | 5204140 | 5205661 |
| chr_3 | g673 | g673.t3 | exon | g673.t3.exon1 | 5204140 | 5205208 |
| chr_3 | g673 | g673.t3 | TTS | g673.t3 | 5204153 | 5204153 |
| chr_3 | g673 | g673.t3 | cds | g673.t3.CDS1 | 5205183 | 5205208 |
| chr_3 | g673 | g673.t3 | exon | g673.t3.exon2 | 5205268 | 5205458 |
| chr_3 | g673 | g673.t3 | cds | g673.t3.CDS2 | 5205268 | 5205458 |
| chr_3 | g673 | g673.t3 | exon | g673.t3.exon3 | 5205522 | 5205661 |
| chr_3 | g673 | g673.t3 | cds | g673.t3.CDS3 | 5205522 | 5205658 |
| chr_3 | g673 | g673.t3 | TSS | g673.t3 | 5205682 | 5205682 |
Sequences
>g673.t3 Gene=g673 Length=1400
GCAATGGTTGCGGTCTATGAAGGAAAAGGATCACATTATGTGAAACATGTGGACAATCCA
AATAAAGATGGTCGTTGCATTACCTGCATATATTATTTAAATGTCAACTGGAATGTGCAA
GAGAGTGGCGGTTTGTTGAGAATTTTTCCCGATGGTTGGGTGGATCGAATTGCTGACATT
GAGCCAATTTTCGATCGAATAACCTTTTTCTGGAGTGACAGACGAAATCCTCATGAAGTA
CAACCTGCACATAGAACAAGATATGCCATAACACTTTGGTATTTTGACGCACATGAACGT
GAAGCGGCTGTTAGAAAATACAAAAAAGACTGTGAAAACCTGTTGAAAGCAGCTTGAAAA
TTGTCTTACTTAAAATCTCATCAAATTACAAAATTTTAATTTTAGCCATAGTCATACAAA
GATTGTGCAAAGTTCACTTTTTTATACAAACAAAACATTGCACTTTATTTTTTTATTTTT
GTAAAAAAAGGTGTTGAGATGAATTTATTTTTTTGTGCATTAAACTCGAATGTGAATTTT
AACCCCGTGCGCAAGACAAAGTGAAAAATTTTATCACACAAAAAGAAATTATCAAAAAAA
AATGAATCAAAAAAAAGTATTTAATCCGCTGCGATAAAAGAAGTGAAATTTGCTCGTAAA
TTGTTGTGAAATAAAATCAGTAAAAAAATAAACATGTGAGGAATGTGACATTTATTTGAG
ATTTGCTAAAAATGCTAACTTTCATAGATGAATGTGAAAATTTTTAAATAGCGACATAAT
GTCAATTCTAATAATTATTTAGACAACAATCTTAAAGTTTACTAACATCACATCATTGTG
CAAATAAAATTTGGCATGTGCAAACATAAAAAAGAATTTTTAAGATAATTTTATTCAAAT
GGTGCAATTTACATGTTAATGACTATCTAAATATAAAAAACTAAAACATTGAGATTCTAT
TATGAAATAAATTCCATAAATTTAGTATTCAGTTCGAATACCATGAAAGAAAAAAAAAAT
CTTAAAAATTTTCTTTGTGTTGCCACAGCACTCGTGGCGATTTTTTCGACTATTTTTGCC
ATGCCTTCAATCTATTTGCCTTGAAATATCCACGTACGCGGTATAAAATAATTCTTCTCT
AATTGATAAAATCAACAAATGTAAATAAGTAGGAAATGTCTTCTGATAATGAATAAAATT
TAAGAAAAATGTAAAAATAACTACTTGTTATGAATGATGTCATTAATTAAAATATAATTT
GTTTCTATACACTTATAAATATATTTTGAGGATTATTAAATATTAATAATGAAAAGAGTC
TGAAAAGTCATCTGGATGAAAGTTTTTATTAAAAAATAAATTGATGTTTTTGGAATCAAT
AAGAAGGAAAAAAACTTGTT
>g673.t3 Gene=g673 Length=117
MVAVYEGKGSHYVKHVDNPNKDGRCITCIYYLNVNWNVQESGGLLRIFPDGWVDRIADIE
PIFDRITFFWSDRRNPHEVQPAHRTRYAITLWYFDAHEREAAVRKYKKDCENLLKAA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 3 | g673.t3 | Gene3D | G3DSA:2.60.120.620 | q2cbj1_9rhob like domain | 1 | 116 | 0.000 |
| 2 | g673.t3 | PANTHER | PTHR12907 | EGL NINE HOMOLOG-RELATED | 1 | 112 | 0.000 |
| 1 | g673.t3 | Pfam | PF13640 | 2OG-Fe(II) oxygenase superfamily | 2 | 93 | 0.000 |
| 4 | g673.t3 | ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 1 | 95 | 10.414 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055114 | NA | NA |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
