General information for g673.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Egl nine homolog 1.
Parent gene
- The parent gene g673 is located on chr_3: 5207909..5209193 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_3 | g673 | g673.t4 | isoform | g673.t4 | 5204140 | 5207590 |
| chr_3 | g673 | g673.t4 | exon | g673.t4.exon1 | 5204140 | 5205208 |
| chr_3 | g673 | g673.t4 | TTS | g673.t4 | 5204153 | 5204153 |
| chr_3 | g673 | g673.t4 | cds | g673.t4.CDS1 | 5205183 | 5205208 |
| chr_3 | g673 | g673.t4 | exon | g673.t4.exon2 | 5205268 | 5205458 |
| chr_3 | g673 | g673.t4 | cds | g673.t4.CDS2 | 5205268 | 5205458 |
| chr_3 | g673 | g673.t4 | exon | g673.t4.exon3 | 5205522 | 5205661 |
| chr_3 | g673 | g673.t4 | cds | g673.t4.CDS3 | 5205522 | 5205661 |
| chr_3 | g673 | g673.t4 | exon | g673.t4.exon4 | 5206268 | 5206348 |
| chr_3 | g673 | g673.t4 | cds | g673.t4.CDS4 | 5206268 | 5206348 |
| chr_3 | g673 | g673.t4 | exon | g673.t4.exon5 | 5207468 | 5207590 |
| chr_3 | g673 | g673.t4 | cds | g673.t4.CDS5 | 5207468 | 5207524 |
| chr_3 | g673 | g673.t4 | TSS | g673.t4 | 5208282 | 5208282 |
Sequences
>g673.t4 Gene=g673 Length=1604
GATGGACAACTTGTGTCAACAACAAAATCAAAATTAGATCATAAGCATATTAGAAGTGAT
AAAATAATGTGGGTCGATGGAAAAGAACAAGGCCTTTATAATATCAAATATCTGATGAAT
CAGGTGGACGCTGTGATAACATTAGCGAATCGTATGAGAAACAACGGAAAATTAGGACAA
TATAACATACGTGAGAGAACGAAGGCAATGGTTGCGGTCTATGAAGGAAAAGGATCACAT
TATGTGAAACATGTGGACAATCCAAATAAAGATGGTCGTTGCATTACCTGCATATATTAT
TTAAATGTCAACTGGAATGTGCAAGAGAGTGGCGGTTTGTTGAGAATTTTTCCCGATGGT
TGGGTGGATCGAATTGCTGACATTGAGCCAATTTTCGATCGAATAACCTTTTTCTGGAGT
GACAGACGAAATCCTCATGAAGTACAACCTGCACATAGAACAAGATATGCCATAACACTT
TGGTATTTTGACGCACATGAACGTGAAGCGGCTGTTAGAAAATACAAAAAAGACTGTGAA
AACCTGTTGAAAGCAGCTTGAAAATTGTCTTACTTAAAATCTCATCAAATTACAAAATTT
TAATTTTAGCCATAGTCATACAAAGATTGTGCAAAGTTCACTTTTTTATACAAACAAAAC
ATTGCACTTTATTTTTTTATTTTTGTAAAAAAAGGTGTTGAGATGAATTTATTTTTTTGT
GCATTAAACTCGAATGTGAATTTTAACCCCGTGCGCAAGACAAAGTGAAAAATTTTATCA
CACAAAAAGAAATTATCAAAAAAAAATGAATCAAAAAAAAGTATTTAATCCGCTGCGATA
AAAGAAGTGAAATTTGCTCGTAAATTGTTGTGAAATAAAATCAGTAAAAAAATAAACATG
TGAGGAATGTGACATTTATTTGAGATTTGCTAAAAATGCTAACTTTCATAGATGAATGTG
AAAATTTTTAAATAGCGACATAATGTCAATTCTAATAATTATTTAGACAACAATCTTAAA
GTTTACTAACATCACATCATTGTGCAAATAAAATTTGGCATGTGCAAACATAAAAAAGAA
TTTTTAAGATAATTTTATTCAAATGGTGCAATTTACATGTTAATGACTATCTAAATATAA
AAAACTAAAACATTGAGATTCTATTATGAAATAAATTCCATAAATTTAGTATTCAGTTCG
AATACCATGAAAGAAAAAAAAAATCTTAAAAATTTTCTTTGTGTTGCCACAGCACTCGTG
GCGATTTTTTCGACTATTTTTGCCATGCCTTCAATCTATTTGCCTTGAAATATCCACGTA
CGCGGTATAAAATAATTCTTCTCTAATTGATAAAATCAACAAATGTAAATAAGTAGGAAA
TGTCTTCTGATAATGAATAAAATTTAAGAAAAATGTAAAAATAACTACTTGTTATGAATG
ATGTCATTAATTAAAATATAATTTGTTTCTATACACTTATAAATATATTTTGAGGATTAT
TAAATATTAATAATGAAAAGAGTCTGAAAAGTCATCTGGATGAAAGTTTTTATTAAAAAA
TAAATTGATGTTTTTGGAATCAATAAGAAGGAAAAAAACTTGTT
>g673.t4 Gene=g673 Length=164
MWVDGKEQGLYNIKYLMNQVDAVITLANRMRNNGKLGQYNIRERTKAMVAVYEGKGSHYV
KHVDNPNKDGRCITCIYYLNVNWNVQESGGLLRIFPDGWVDRIADIEPIFDRITFFWSDR
RNPHEVQPAHRTRYAITLWYFDAHEREAAVRKYKKDCENLLKAA
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g673.t4 | Coils | Coil | Coil | 150 | 164 | - |
| 4 | g673.t4 | Gene3D | G3DSA:2.60.120.620 | q2cbj1_9rhob like domain | 1 | 163 | 5.0E-58 |
| 2 | g673.t4 | PANTHER | PTHR12907 | EGL NINE HOMOLOG-RELATED | 1 | 159 | 1.8E-75 |
| 1 | g673.t4 | Pfam | PF13640 | 2OG-Fe(II) oxygenase superfamily | 48 | 140 | 1.1E-19 |
| 6 | g673.t4 | ProSiteProfiles | PS51471 | Fe(2+) 2-oxoglutarate dioxygenase domain profile. | 43 | 142 | 10.257 |
| 3 | g673.t4 | SMART | SM00702 | p4hc | 8 | 141 | 2.2E-13 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
| GO:0031418 | L-ascorbic acid binding | MF |
| GO:0016491 | oxidoreductase activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
